Detailed information NTG0442257

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DBV21_RS03580
• Genome accession: NZ_CP053029
• Coordinates: 816378..817715 (-)
• Length: 445 a.a.
• NCBI ID: WP_214348991.1
• Uniprot ID: -
• Organism: Pseudomonas congelans strain TLP2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 811378..822715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBV21_RS03565 (DBV21_03805)	-	811509..814705 (+)	3197	Protein_709	pilus assembly protein	-
DBV21_RS03570 (DBV21_03810)	-	814717..815121 (+)	405	WP_024683035.1	type IV pilin protein	-
DBV21_RS03575 (DBV21_03815)	thiO	815147..816250 (+)	1104	WP_096131280.1	glycine oxidase ThiO	-
DBV21_RS03580 (DBV21_03820)	pilR	816378..817715 (-)	1338	WP_214348991.1	sigma-54-dependent transcriptional regulator	Regulator
DBV21_RS03585 (DBV21_03825)	pilS	817718..819310 (-)	1593	WP_096131278.1	sensor histidine kinase	Regulator
DBV21_RS03590 (DBV21_03830)	-	819300..819539 (-)	240	WP_032613223.1	PP0621 family protein	-
DBV21_RS03595 (DBV21_03835)	-	819660..820682 (-)	1023	WP_010427430.1	outer membrane protein assembly factor BamD	-
DBV21_RS03600 (DBV21_03840)	rluD	820832..821794 (+)	963	WP_010427432.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
DBV21_RS03605 (DBV21_03845)	pgeF	821791..822519 (+)	729	WP_032613221.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49724.68 Da
• Isoelectric Point: 6.2986

>NTDB_id=442257 DBV21_RS03580 WP_214348991.1 816378..817715(-) (pilR) [Pseudomonas congelans strain TLP2]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAQPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPPLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESIERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=442257 DBV21_RS03580 WP_214348991.1 816378..817715(-) (pilR) [Pseudomonas congelans strain TLP2]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGACGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGGCGCAT
GAAACTCGACACCCGCAGCGCCCGTAACGTTGCCGAAGCGCACGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGACGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTACCGGTGGCG
ATGATCACTGCCCACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGTTGCGCGAACTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACAACCCACGCGCAGCATCGACAACC
GCCTGCTGGGTGACTCGCTGGCGATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCTCGCAGTCAGGCGCCGATCTAC
ATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTTGTAGCGCGGCTGATCCACGAGCAGGGCCCGCGCATCGACAAACCTTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTCATGGAAAGTGAATTCTTCGGCCATCGTAAAGGCAGTTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAGGCGGCGCATACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCA
CTGGCCATGCAGGTCAAACTCCTGCGCGCCATCCAGGAAAAATCCATCCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACTCACAAGAATCTGAATGCAGAGGTCGCGGCCGGTCGGTTTCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTACGCGTGCCACCGTTACGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGTGTT
CTCAAGCGCCTTGCCGGGAACGGCGCGCAACCCGTCGCGCGCTTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTATCG
ATTCCCCGGTAACGTGCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACGCTGTGTGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACCGAGTCCGCCAGCCCTCAGGAGAGCGACGGCCCAAGCCTGGCCGATATCGACAACCTTGAAGAC
TATCTGGAAAGCATCGAACGCCAGCTCATCCTGCAGGCACTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCAGAAAG
GCTCAGTTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	77.652	99.551	0.773
pilR	Acinetobacter baumannii strain A118	49.036	100	0.515
luxO	Vibrio cholerae strain A1552	37.838	99.775	0.378