Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   DBV21_RS03585 Genome accession   NZ_CP053029
Coordinates   817718..819310 (-) Length   530 a.a.
NCBI ID   WP_096131278.1    Uniprot ID   -
Organism   Pseudomonas congelans strain TLP2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 812718..824310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBV21_RS03570 (DBV21_03810) - 814717..815121 (+) 405 WP_024683035.1 type IV pilin protein -
  DBV21_RS03575 (DBV21_03815) thiO 815147..816250 (+) 1104 WP_096131280.1 glycine oxidase ThiO -
  DBV21_RS03580 (DBV21_03820) pilR 816378..817715 (-) 1338 WP_214348991.1 sigma-54-dependent transcriptional regulator Regulator
  DBV21_RS03585 (DBV21_03825) pilS 817718..819310 (-) 1593 WP_096131278.1 sensor histidine kinase Regulator
  DBV21_RS03590 (DBV21_03830) - 819300..819539 (-) 240 WP_032613223.1 PP0621 family protein -
  DBV21_RS03595 (DBV21_03835) - 819660..820682 (-) 1023 WP_010427430.1 outer membrane protein assembly factor BamD -
  DBV21_RS03600 (DBV21_03840) rluD 820832..821794 (+) 963 WP_010427432.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DBV21_RS03605 (DBV21_03845) pgeF 821791..822519 (+) 729 WP_032613221.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58035.95 Da        Isoelectric Point: 6.8198

>NTDB_id=442258 DBV21_RS03585 WP_096131278.1 817718..819310(-) (pilS) [Pseudomonas congelans strain TLP2]
MTADSPSLVSPQAQRILRLYHLYRLTIGIVLVLLISSSLETELLQLANQNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLETLNALILQRMRTGILVLDANHQVLLANQGALNLLGQEQLVGQIID
ACSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPN
QAIHIEISPGTLTTRMDSGQLTQIMTNLLQNGLRYSGKNHPSAQVWLKLHNDQRSDLPTLEVLDDGPGVSEQHLSKMFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=442258 DBV21_RS03585 WP_096131278.1 817718..819310(-) (pilS) [Pseudomonas congelans strain TLP2]
GTGACCGCTGACTCACCATCCCTTGTCAGCCCGCAGGCGCAGCGGATTCTGCGGCTGTACCACCTCTATCGACTGACCAT
CGGCATCGTCCTGGTCCTGTTGATTTCCAGCAGCCTGGAAACCGAACTGCTGCAACTGGCCAACCAGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAGCGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACCGACGCGATCATGCTGTCCGCGCTGTTCTACGCAGCGGGCGGCCCTTCCAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGTCTGCTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGTACACCCTCGGTTTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTATGCTTCGCCGCTGCCCTGCTGGTGCAGGCGCTGACAGCGCGCATGCAGGTCAGCGAGGTACTGGCCGAACAGCG
CGCGGCGGATGTCGACAGCCTTGAAACGCTCAACGCGCTGATCCTGCAACGCATGCGTACCGGCATTCTGGTGCTGGATG
CCAACCATCAGGTGCTGCTGGCCAATCAGGGTGCCTTGAACCTGCTGGGCCAGGAACAGCTGGTCGGCCAGATCATCGAC
GCCTGCTCGCCACAACTGGTCGAACGCCTGCGTCAGTGGCTCGTCAACCCGATCATGGTGCCGCGCAGCATCACCACCGC
CCCCGTCGGGCTGGTGCTGCAACCGAGCTTTGCCACGCTCAACCGGGGCGATCAGCGTCAGACACTGATTTTTCTCGAAG
ACCTGTCGCAGATTGCCCACCAGGCGCAGCAACTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGCCATGCGGCGCAGTTGCTTAATGAATCGGAAGAGCTCAGCGCGGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGACGCATTGACCGGGTCATCGAAAATGTCCTGCAGTTGTCGCGCAGACGCG
AAGCGCAACCCGAACTGCTTGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGTTCCGCTGCGCCCAAT
CAGGCGATTCATATCGAAATCAGCCCCGGCACGCTGACAACTCGCATGGATTCTGGACAGCTGACGCAGATCATGACCAA
CCTGCTGCAGAACGGCCTGCGCTACAGCGGCAAAAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCACAATGACCAGA
GGAGCGATTTGCCTACGCTGGAAGTGCTGGACGACGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATGTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCACCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.829

100

0.609