Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IRJ28_RS03915 Genome accession   NZ_CP064096
Coordinates   776800..777495 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain N1142-3at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 771800..782495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS03895 folC 772731..774023 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IRJ28_RS03900 comC 774163..774909 (+) 747 WP_010886586.1 A24 family peptidase Machinery gene
  IRJ28_RS03905 spoIIB 775043..776041 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  IRJ28_RS03910 maf 776194..776763 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IRJ28_RS03915 ysxA/radC 776800..777495 (+) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  IRJ28_RS03920 mreB 777587..778600 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IRJ28_RS03925 mreC 778631..779503 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  IRJ28_RS03930 mreD 779500..780018 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  IRJ28_RS03935 minC 780071..780751 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  IRJ28_RS03940 minD 780753..781559 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=442156 IRJ28_RS03915 WP_003246034.1 776800..777495(+) (ysxA/radC) [Bacillus subtilis strain N1142-3at]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=442156 IRJ28_RS03915 WP_003246034.1 776800..777495(+) (ysxA/radC) [Bacillus subtilis strain N1142-3at]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424