Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   O3Y_RS13160 Genome accession   NC_016944
Coordinates   2828558..2829190 (+) Length   210 a.a.
NCBI ID   WP_000242742.1    Uniprot ID   -
Organism   Vibrio cholerae IEC224     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823558..2834190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O3Y_RS13135 (O3Y_12490) - 2823624..2825540 (+) 1917 WP_000627678.1 ABC transporter ATP-binding protein -
  O3Y_RS13140 (O3Y_12495) - 2825541..2826026 (+) 486 WP_001278735.1 TIGR02444 family protein -
  O3Y_RS13145 (O3Y_12500) - 2826023..2827012 (+) 990 WP_000627574.1 hydrolase -
  O3Y_RS13150 (O3Y_12505) - 2827140..2827349 (+) 210 WP_000586562.1 YheU family protein -
  O3Y_RS13155 (O3Y_12510) - 2827446..2828315 (+) 870 WP_001274669.1 phosphoribulokinase -
  O3Y_RS13160 (O3Y_12515) crp 2828558..2829190 (+) 633 WP_000242742.1 cAMP-activated global transcriptional regulator CRP Regulator
  O3Y_RS13165 (O3Y_12520) - 2829269..2830060 (-) 792 WP_000189091.1 DUF1338 domain-containing protein -
  O3Y_RS13170 (O3Y_12525) astD 2830203..2831660 (-) 1458 WP_000150128.1 succinylglutamate-semialdehyde dehydrogenase -
  O3Y_RS13175 (O3Y_12530) astA 2831670..2832689 (-) 1020 WP_000962042.1 arginine N-succinyltransferase -
  O3Y_RS13180 (O3Y_12535) - 2832829..2834040 (-) 1212 WP_000215482.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23675.48 Da        Isoelectric Point: 8.2851

>NTDB_id=44214 O3Y_RS13160 WP_000242742.1 2828558..2829190(+) (crp) [Vibrio cholerae IEC224]
MVLGKHQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKTPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLARQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=44214 O3Y_RS13160 WP_000242742.1 2828558..2829190(+) (crp) [Vibrio cholerae IEC224]
ATGGTTCTAGGTAAACATCAAACCGATCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCATCAAA
AAGCACACTGATCCACGCGGGTGAGAAAGCGGAAACGCTGTACTACATCGTAAAAGGTTCAGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAAGAGATGATTCTCTCTTACCTGAACCAAGGTGATTTTATCGGTGAGCTTGGCTTGTTTGAAGAAGGC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAAACACCTTGTGAAGTGGCTGAAATCTCATTTAAGAAATTCCGTCAATTGAT
CCAAGTAAACCCAGATATCTTGATGCGCCTTTCAGGTCAAATGGCTCGTCGTCTGCAAGTGACCAGCCAGAAAGTTGGCG
ACCTTGCGTTCCTAGACGTAACTGGCCGTATCGCACAGACTCTGCTGAATCTTGCACGTCAGCCAGATGCGATGACTCAC
CCTGACGGTATGCAAATCAAGATCACTCGCCAAGAGATCGGTCAAATTGTTGGCTGTTCTCGCGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATCTCTGCCCACGGTAAAACCATCGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.524

100

0.995
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment