Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GV829_RS04060 Genome accession   NZ_CP053015
Coordinates   882553..883080 (-) Length   175 a.a.
NCBI ID   WP_281356173.1    Uniprot ID   A0A6M4ASP1
Organism   Sphingomonas lacunae strain CSW-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 877553..888080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GV829_RS04040 (GV829_04040) - 878371..880635 (+) 2265 WP_169944060.1 NADP-dependent malic enzyme -
  GV829_RS04045 (GV829_04045) bamE 880712..881230 (-) 519 WP_169944064.1 outer membrane protein assembly factor BamE -
  GV829_RS04050 (GV829_04050) - 881416..881940 (+) 525 WP_169944066.1 ubiquinol-cytochrome C chaperone family protein -
  GV829_RS04055 (GV829_04055) - 881944..882540 (+) 597 WP_169944069.1 DUF177 domain-containing protein -
  GV829_RS04060 (GV829_04060) ssb 882553..883080 (-) 528 WP_281356173.1 single-stranded DNA-binding protein Machinery gene
  GV829_RS04065 (GV829_04065) - 883115..884971 (-) 1857 WP_169944072.1 ferrous iron transporter B -
  GV829_RS04070 (GV829_04070) - 884968..885270 (-) 303 WP_343042855.1 FeoA family protein -
  GV829_RS04075 (GV829_04075) - 885364..886035 (-) 672 WP_169944076.1 COQ9 family protein -
  GV829_RS04080 (GV829_04080) - 886071..887000 (-) 930 WP_169944078.1 DMT family transporter -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18058.71 Da        Isoelectric Point: 5.3027

>NTDB_id=442128 GV829_RS04060 WP_281356173.1 882553..883080(-) (ssb) [Sphingomonas lacunae strain CSW-10]
MAGSVNKVILVGNLGADPEVKSFQNGGRIANIRIATSESWKDRATGERKERTEWHNVVIQSEGLVGVVERFLKKGSKVYI
EGSLRTRKWQDRDGNDRYTTEISVGVGGVLTMLDGAQGGGAGGGARSGGNWGGSSGGSSGGWDQGGGPGGGNDFGGGRSS
GGSPFPDDLDDEVPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=442128 GV829_RS04060 WP_281356173.1 882553..883080(-) (ssb) [Sphingomonas lacunae strain CSW-10]
ATGGCGGGCAGCGTCAACAAGGTCATATTGGTCGGCAATCTGGGTGCTGATCCGGAGGTCAAGTCCTTTCAGAATGGCGG
GCGGATTGCCAACATCCGCATTGCCACCAGCGAAAGCTGGAAAGATCGTGCCACCGGTGAGCGCAAGGAGCGCACCGAAT
GGCATAATGTTGTCATCCAGTCCGAAGGATTGGTCGGCGTTGTCGAACGCTTTCTGAAAAAGGGCAGCAAGGTCTATATC
GAGGGCTCCTTGCGAACCCGAAAATGGCAGGATCGCGACGGCAATGACCGTTACACGACCGAAATCTCTGTGGGTGTCGG
TGGCGTTCTGACCATGCTTGATGGCGCGCAAGGCGGCGGCGCTGGCGGCGGTGCCCGTTCAGGCGGCAATTGGGGCGGAT
CGTCCGGCGGCAGCTCGGGCGGCTGGGACCAGGGCGGCGGCCCGGGTGGCGGCAATGATTTTGGTGGCGGCCGCAGCAGC
GGCGGATCACCCTTCCCGGATGATCTCGACGACGAAGTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4ASP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.55

100

0.497
  ssb Vibrio cholerae strain A1552

46.961

100

0.486
  ssb Neisseria meningitidis MC58

36.667

100

0.377
  ssb Neisseria gonorrhoeae MS11

36.667

100

0.377