Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HJ586_RS20985 Genome accession   NZ_CP053014
Coordinates   4680833..4681381 (-) Length   182 a.a.
NCBI ID   WP_012886084.1    Uniprot ID   D2BVZ8
Organism   Dickeya zeae strain MS_2018     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4675833..4686381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ586_RS20950 (HJ586_20965) - 4676383..4676964 (-) 582 WP_236305772.1 DUF4255 domain-containing protein -
  HJ586_RS20955 (HJ586_20970) - 4677198..4677662 (+) 465 WP_033581216.1 hypothetical protein -
  HJ586_RS20960 (HJ586_20975) - 4677707..4678294 (-) 588 WP_236305773.1 hypothetical protein -
  HJ586_RS20965 (HJ586_20980) - 4678470..4679099 (+) 630 WP_236305774.1 NAD-dependent dehydratase -
  HJ586_RS20970 (HJ586_20985) - 4679142..4679717 (+) 576 WP_236305776.1 flavin reductase family protein -
  HJ586_RS20975 (HJ586_20990) - 4679778..4680467 (-) 690 WP_236305778.1 hypothetical protein -
  HJ586_RS20980 (HJ586_20995) - 4680530..4680727 (-) 198 WP_236305780.1 hypothetical protein -
  HJ586_RS20985 (HJ586_21000) ssb 4680833..4681381 (-) 549 WP_012886084.1 single-stranded DNA-binding protein Machinery gene
  HJ586_RS20990 (HJ586_21005) uvrA 4681615..4684446 (+) 2832 WP_236305785.1 excinuclease ABC subunit UvrA -
  HJ586_RS20995 (HJ586_21010) - 4684869..4685288 (+) 420 WP_236305792.1 secondary thiamine-phosphate synthase enzyme YjbQ -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19464.46 Da        Isoelectric Point: 5.2440

>NTDB_id=442125 HJ586_RS20985 WP_012886084.1 4680833..4681381(-) (ssb) [Dickeya zeae strain MS_2018]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=442125 HJ586_RS20985 WP_012886084.1 4680833..4681381(-) (ssb) [Dickeya zeae strain MS_2018]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGTAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGTGCACCTGCTGGTGGCAACATGGGCGGCAATACAGGTGGTG
GTAACGCACCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGTCAATCCCGT
CCGCAGCAAAGCGCCCCAATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2BVZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.656

100

0.753
  ssb Glaesserella parasuis strain SC1401

55.319

100

0.571
  ssb Neisseria meningitidis MC58

45.263

100

0.473
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.473