Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HJ580_RS17125 | Genome accession | NZ_CP053013 |
| Coordinates | 3844112..3844660 (+) | Length | 182 a.a. |
| NCBI ID | WP_012886084.1 | Uniprot ID | D2BVZ8 |
| Organism | Dickeya zeae strain MS_2014 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3844112..3864169 | 3844112..3844660 | within | 0 |
| IScluster/Tn | 3844908..3846028 | 3844112..3844660 | flank | 248 |
Gene organization within MGE regions
Location: 3844112..3864169
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ580_RS17125 (HJ580_17150) | ssb | 3844112..3844660 (+) | 549 | WP_012886084.1 | single-stranded DNA-binding protein | Machinery gene |
| HJ580_RS17130 (HJ580_17155) | - | 3844908..3846028 (+) | 1121 | WP_102802316.1 | IS3 family transposase | - |
| HJ580_RS17135 (HJ580_17160) | drt3a | 3846265..3847614 (+) | 1350 | WP_102802318.1 | antiviral reverse transcriptase Drt3a | - |
| HJ580_RS17140 (HJ580_17165) | drt3b | 3847607..3849649 (+) | 2043 | WP_102802319.1 | antiviral reverse transcriptase Drt3b | - |
| HJ580_RS17145 (HJ580_17170) | - | 3850375..3853530 (-) | 3156 | WP_102802320.1 | DEAD/DEAH box helicase | - |
| HJ580_RS17150 (HJ580_17175) | - | 3853520..3854338 (-) | 819 | WP_085455645.1 | Hachiman antiphage defense system protein HamA | - |
| HJ580_RS17155 (HJ580_17180) | - | 3854697..3855272 (-) | 576 | WP_102802321.1 | flavin reductase family protein | - |
| HJ580_RS17160 (HJ580_17185) | - | 3855315..3855944 (-) | 630 | WP_102802322.1 | NAD-dependent dehydratase | - |
| HJ580_RS17165 (HJ580_17190) | - | 3856223..3856804 (+) | 582 | WP_102802323.1 | DUF4255 domain-containing protein | - |
| HJ580_RS17170 (HJ580_17195) | - | 3856801..3857610 (+) | 810 | WP_102802324.1 | hypothetical protein | - |
| HJ580_RS17175 (HJ580_17200) | - | 3857747..3859300 (+) | 1554 | WP_102802325.1 | phage tail sheath family protein | - |
| HJ580_RS17180 (HJ580_17205) | - | 3859362..3859832 (+) | 471 | WP_012886094.1 | phage tail protein | - |
| HJ580_RS17185 (HJ580_17210) | - | 3859939..3860397 (+) | 459 | WP_023640712.1 | phage tail protein | - |
| HJ580_RS17190 (HJ580_17215) | - | 3860418..3860618 (+) | 201 | WP_102802326.1 | hypothetical protein | - |
| HJ580_RS17195 (HJ580_17220) | - | 3860633..3861280 (+) | 648 | WP_019843442.1 | hypothetical protein | - |
| HJ580_RS17200 (HJ580_17225) | vgrG | 3861293..3863083 (+) | 1791 | WP_102802327.1 | type VI secretion system tip protein VgrG | - |
| HJ580_RS17205 (HJ580_17230) | - | 3863448..3863747 (+) | 300 | WP_012768437.1 | PAAR domain-containing protein | - |
| HJ580_RS17210 (HJ580_17235) | - | 3863750..3864169 (+) | 420 | WP_102802328.1 | GPW/gp25 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19464.46 Da Isoelectric Point: 5.2440
>NTDB_id=442097 HJ580_RS17125 WP_012886084.1 3844112..3844660(+) (ssb) [Dickeya zeae strain MS_2014]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQGGQDRYTTEVVVDISGSMQMLGGRTGGGAPAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQSR
PQQSAPMPGNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=442097 HJ580_RS17125 WP_012886084.1 3844112..3844660(+) (ssb) [Dickeya zeae strain MS_2014]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCAGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGTGGCAATACGGGTGGTG
GTAACGCACCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCACGT
CCGCAGCAAAGCGCCCCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCAGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGGGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGTACCGGCGGCGGCGCACCTGCTGGTGGCAACATGGGTGGCAATACGGGTGGTG
GTAACGCACCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGCCAGTCACGT
CCGCAGCAAAGCGCCCCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.656 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
55.319 |
100 |
0.571 |
| ssb | Neisseria meningitidis MC58 |
45.263 |
100 |
0.473 |
| ssb | Neisseria gonorrhoeae MS11 |
45.263 |
100 |
0.473 |