Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HJC54_RS22070 Genome accession   NZ_CP052867
Coordinates   2041861..2042421 (-) Length   186 a.a.
NCBI ID   WP_015877024.1    Uniprot ID   -
Organism   Burkholderia glumae strain HN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2036861..2047421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJC54_RS22050 (HJC54_22065) - 2038204..2038671 (-) 468 WP_015877021.1 MarR family winged helix-turn-helix transcriptional regulator -
  HJC54_RS22055 (HJC54_22070) - 2039055..2039969 (-) 915 WP_015877022.1 LysR family transcriptional regulator -
  HJC54_RS22060 (HJC54_22075) - 2040201..2040734 (-) 534 WP_254220704.1 hypothetical protein -
  HJC54_RS22065 (HJC54_22080) - 2040912..2041553 (-) 642 WP_254225580.1 hypothetical protein -
  HJC54_RS22070 (HJC54_22085) ssb 2041861..2042421 (-) 561 WP_015877024.1 single-stranded DNA-binding protein Machinery gene
  HJC54_RS22075 (HJC54_22090) - 2042492..2043688 (-) 1197 WP_015877025.1 MFS transporter -
  HJC54_RS22080 (HJC54_22095) uvrA 2043917..2046787 (+) 2871 WP_015877026.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 18874.58 Da        Isoelectric Point: 5.3243

>NTDB_id=441957 HJC54_RS22070 WP_015877024.1 2041861..2042421(-) (ssb) [Burkholderia glumae strain HN1]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVNEYLKKGSSVYIEG
RLRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGGGGGGDDGYGGGGYGGGGGRGGDMERGGGGGRASGGGGGASRGG
SGGGGSSRPSQPAGGGLDEMDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=441957 HJC54_RS22070 WP_015877024.1 2041861..2042421(-) (ssb) [Burkholderia glumae strain HN1]
ATGGCATCCGTCAACAAGGTCATTCTCGTCGGTAATCTGGGCGCCGACCCCGAAGTGCGCTACCTGCCGAGCGGCGACGC
GGTGGCGAACATCCGCCTCGCGACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTGGCGTTCTTCGGCCGGCTGGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGG
CGCCTGCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGACCGTTACTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTGGGCGGCCGTGGTGGGTCGGGCGGCGGCGGCGGTGGTGGTGACGACGGCTACGGCGGCGGCGGCTACGGTGGTGGCG
GCGGTCGCGGCGGCGACATGGAGCGCGGCGGCGGCGGTGGCCGTGCTTCCGGCGGTGGCGGCGGTGCCTCGCGCGGCGGT
AGCGGCGGCGGCGGTTCGAGCCGTCCGAGCCAGCCGGCCGGTGGCGGACTCGACGAGATGGATGACGATATTCCGTTCTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

100

0.516
  ssb Glaesserella parasuis strain SC1401

44.615

100

0.468
  ssb Neisseria gonorrhoeae MS11

41.848

98.925

0.414
  ssb Neisseria meningitidis MC58

40.217

98.925

0.398