NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	IRJ26_RS14830	Genome accession	NZ_CP064094
Coordinates	2849340..2849945 (+)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain N1108-5at
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2844340..2854945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IRJ26_RS14795	-	2844663..2844803 (-)	141	WP_004398683.1	hypothetical protein	-
IRJ26_RS14800	yrzH	2844810..2845100 (-)	291	WP_003246047.1	DUF5412 family protein	-
IRJ26_RS14805	-	2845185..2845307 (+)	123	WP_003229707.1	hypothetical protein	-
IRJ26_RS14810	yrzF	2845353..2846000 (-)	648	WP_003246159.1	phosphotransferase	-
IRJ26_RS14815	iolG	2846238..2847263 (+)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
IRJ26_RS14820	csbX	2847334..2848641 (+)	1308	WP_003246197.1	MFS transporter	-
IRJ26_RS14825	bofC	2848689..2849201 (+)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
IRJ26_RS14830	ruvA	2849340..2849945 (+)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
IRJ26_RS14835	ruvB	2849956..2850960 (+)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
IRJ26_RS14840	yrzS	2850953..2851153 (+)	201	WP_003222669.1	DUF2905 domain-containing protein	-
IRJ26_RS14845	queA	2851183..2852211 (+)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
IRJ26_RS14850	tgt	2852238..2853383 (+)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
IRJ26_RS14855	yajC	2853420..2853686 (+)	267	WP_004398708.1	preprotein translocase subunit YajC	-
IRJ26_RS14860	-	2853743..2854132 (-)	390	WP_004398667.1	TIGR04086 family membrane protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=441925 IRJ26_RS14830 WP_003229717.1 2849340..2849945(+) (ruvA) [Bacillus subtilis strain N1108-5at]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=441925 IRJ26_RS14830 WP_003229717.1 2849340..2849945(+) (ruvA) [Bacillus subtilis strain N1108-5at]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0441925