Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKK52_RS24085 Genome accession   NZ_CP052862
Coordinates   5244306..5244836 (+) Length   176 a.a.
NCBI ID   WP_123404375.1    Uniprot ID   A0A423KN19
Organism   Pseudomonas sp. ADAK2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5239306..5249836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK52_RS24070 (HKK52_24070) bfr 5239331..5239795 (+) 465 WP_169372843.1 bacterioferritin -
  HKK52_RS24075 (HKK52_24075) uvrA 5239873..5242707 (-) 2835 WP_169372844.1 excinuclease ABC subunit UvrA -
  HKK52_RS24080 (HKK52_24080) - 5242899..5244296 (+) 1398 WP_133840619.1 MFS transporter -
  HKK52_RS24085 (HKK52_24085) ssb 5244306..5244836 (+) 531 WP_123404375.1 single-stranded DNA-binding protein Machinery gene
  HKK52_RS24090 (HKK52_24090) - 5244907..5247111 (-) 2205 WP_169372845.1 OsmC domain/YcaO domain-containing protein -
  HKK52_RS24095 (HKK52_24095) - 5247256..5248413 (-) 1158 WP_169372846.1 glutathionylspermidine synthase family protein -
  HKK52_RS24100 (HKK52_24100) - 5248426..5249154 (-) 729 WP_169372847.1 DUF1190 domain-containing protein -
  HKK52_RS24105 (HKK52_24105) - 5249175..5249603 (-) 429 WP_169372848.1 DUF350 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19524.69 Da        Isoelectric Point: 5.9314

>NTDB_id=441918 HKK52_RS24085 WP_123404375.1 5244306..5244836(+) (ssb) [Pseudomonas sp. ADAK2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQQAPRPQQSAPQQSRQAPPPQQAA
PQPAPDFDSFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=441918 HKK52_RS24085 WP_123404375.1 5244306..5244836(+) (ssb) [Pseudomonas sp. ADAK2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACTGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCTCAACAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGTCAGCAGCAGGCTCCGCGCCCGCAGCAGTCGGCACCGCAACAGTCGCGCCAGGCTCCGCCTCCACAGCAGGCAGCG
CCGCAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A423KN19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.989

100

0.602
  ssb Glaesserella parasuis strain SC1401

47.396

100

0.517
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483