Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HKK52_RS18295 Genome accession   NZ_CP052862
Coordinates   3981308..3982372 (-) Length   354 a.a.
NCBI ID   WP_169371993.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3976308..3987372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK52_RS18270 (HKK52_18270) aroK 3976971..3977489 (-) 519 WP_169371988.1 shikimate kinase AroK -
  HKK52_RS18275 (HKK52_18275) pilQ 3977494..3979584 (-) 2091 WP_169371989.1 type IV pilus secretin PilQ Machinery gene
  HKK52_RS18280 (HKK52_18280) - 3979598..3980125 (-) 528 WP_169371990.1 pilus assembly protein PilP -
  HKK52_RS18285 (HKK52_18285) pilO 3980122..3980745 (-) 624 WP_169371991.1 type 4a pilus biogenesis protein PilO -
  HKK52_RS18290 (HKK52_18290) - 3980742..3981308 (-) 567 WP_169371992.1 PilN domain-containing protein -
  HKK52_RS18295 (HKK52_18295) comM 3981308..3982372 (-) 1065 WP_169371993.1 pilus assembly protein PilM Machinery gene
  HKK52_RS18300 (HKK52_18300) - 3982588..3985032 (+) 2445 WP_169371994.1 penicillin-binding protein 1A -
  HKK52_RS18305 (HKK52_18305) - 3985257..3986525 (-) 1269 WP_054054610.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38230.73 Da        Isoelectric Point: 4.8199

>NTDB_id=441909 HKK52_RS18295 WP_169371993.1 3981308..3982372(-) (comM) [Pseudomonas sp. ADAK2]
MLGLFNKKTRTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPASAVIEKNIAELEGVGQALSRVLLKARTGIRNVAV
AVAGSAVITKTIEMDAGLSDDEMENQLKIEADQYIPYPLDEVAIDFEVQNVSARNPERVNVLLAACRKENVEVREAALAL
AGLTAKVVDVEAYALERSFGLLATQLASNQERPTVAVVDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTI
EQAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLGTPTQVANP
FADMSLSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=441909 HKK52_RS18295 WP_169371993.1 3981308..3982372(-) (comM) [Pseudomonas sp. ADAK2]
GTGCTAGGACTCTTCAATAAAAAGACCAGAACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTTCTGGAACT
GAGCCGCCAGGGCGACCGCTATCGGGTCGAGGCCTATGCGGTCGAACCGCTGCCAGCCAGTGCCGTCATCGAAAAAAACA
TCGCCGAGCTCGAAGGCGTGGGCCAGGCCCTGTCTCGCGTGCTGCTCAAGGCCCGGACCGGGATCCGCAATGTCGCCGTG
GCCGTGGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGACGCCGGGCTGTCCGACGACGAGATGGAGAACCAGCT
CAAGATCGAGGCCGATCAGTACATTCCCTACCCGTTGGACGAAGTCGCCATCGACTTCGAAGTCCAGAACGTATCGGCGC
GCAACCCCGAACGGGTCAATGTTTTGCTTGCCGCCTGTCGAAAAGAAAACGTCGAGGTTCGCGAGGCTGCCCTGGCTCTG
GCCGGGTTGACCGCCAAGGTGGTGGACGTCGAGGCCTACGCCCTTGAACGTTCCTTTGGTCTGCTGGCGACCCAGCTCGC
CTCCAACCAAGAGCGCCCGACCGTCGCGGTGGTGGACATCGGCGCGACCATGACCACCCTGAGCGTGCTGCACAACGGCC
GGATCATCTACACCCGCGAACAATTGTTTGGTGGTCGCCAGCTCACCGAAGAGATTCAGCGCCGCTACGGGCTGACCATT
GAACAGGCCGGGCTCGCCAAGAAGCAGGGCGGCTTGCCGGACGATTACGTCAGCGAGGTGCTGCAACCGTTCCGCGAGGC
CCTGGTGCAACAGGTCTCTCGTTCATTGCAGTTTTTCTTTGCGTCCGGCCAGTACAATGCGGTCGACCATATTCTGCTGG
CCGGCGGCACCGCCTCGGTGCCCGGGCTCGATCGGCTGATCGAGCAGCGGCTGGGCACTCCGACGCAGGTCGCCAACCCG
TTCGCCGACATGTCGCTGAGCAGCAAGGTCAATGCCGGCGCCCTGGCCAGCGATGCACCGGCCTTGATGATTGCCTGTGG
TCTGGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.78

100

0.568
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

54.802

100

0.548
  pilM Legionella pneumophila strain ERS1305867

48.588

100

0.486