Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKK55_RS22235 Genome accession   NZ_CP052859
Coordinates   4915576..4916097 (-) Length   173 a.a.
NCBI ID   WP_169356614.1    Uniprot ID   A0A7Z3AK73
Organism   Pseudomonas sp. ADAK18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4910576..4921097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK55_RS22210 (HKK55_22210) - 4911025..4912047 (-) 1023 WP_169356609.1 GlxA family transcriptional regulator -
  HKK55_RS22215 (HKK55_22215) - 4912144..4912704 (+) 561 WP_169356610.1 cysteine hydrolase family protein -
  HKK55_RS22220 (HKK55_22220) tam 4912727..4913491 (-) 765 WP_169356611.1 trans-aconitate 2-methyltransferase -
  HKK55_RS22225 (HKK55_22225) - 4913596..4914504 (+) 909 WP_178128859.1 LysR family transcriptional regulator -
  HKK55_RS22230 (HKK55_22230) - 4914672..4915496 (+) 825 WP_169356613.1 alpha/beta fold hydrolase -
  HKK55_RS22235 (HKK55_22235) ssb 4915576..4916097 (-) 522 WP_169356614.1 single-stranded DNA-binding protein Machinery gene
  HKK55_RS22240 (HKK55_22240) - 4916107..4917501 (-) 1395 WP_169356615.1 MFS transporter -
  HKK55_RS22245 (HKK55_22245) uvrA 4917680..4920514 (+) 2835 WP_169356616.1 excinuclease ABC subunit UvrA -
  HKK55_RS22250 (HKK55_22250) bfr 4920582..4921046 (-) 465 WP_169356617.1 bacterioferritin -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19190.33 Da        Isoelectric Point: 5.9455

>NTDB_id=441841 HKK55_RS22235 WP_169356614.1 4915576..4916097(-) (ssb) [Pseudomonas sp. ADAK18]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQP
AADFDSFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=441841 HKK55_RS22235 WP_169356614.1 4915576..4916097(-) (ssb) [Pseudomonas sp. ADAK18]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCCGAGATCGCTGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGTTGCAGACTCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGTGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGTATGTCCAACTCCAACTCGGCACCGCGTC
CACAGCAGTCCCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCCGCACCGCAGCCG
GCAGCAGACTTCGACAGCTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z3AK73

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.333

100

0.607
  ssb Glaesserella parasuis strain SC1401

45.312

100

0.503
  ssb Neisseria meningitidis MC58

46.667

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.023

100

0.468