Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKK56_RS20150 Genome accession   NZ_CP052858
Coordinates   4511981..4512496 (-) Length   171 a.a.
NCBI ID   WP_017849542.1    Uniprot ID   A0A6I3WGC1
Organism   Pseudomonas sp. ADAK20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4506981..4517496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK56_RS20125 (HKK56_20125) - 4507019..4508128 (-) 1110 WP_169390249.1 DUF3182 family protein -
  HKK56_RS20130 (HKK56_20130) - 4508348..4509331 (-) 984 WP_092230779.1 GlxA family transcriptional regulator -
  HKK56_RS20135 (HKK56_20135) - 4509428..4509976 (+) 549 WP_169390248.1 cysteine hydrolase family protein -
  HKK56_RS20140 (HKK56_20140) tam 4509987..4510748 (-) 762 WP_169390247.1 trans-aconitate 2-methyltransferase -
  HKK56_RS20145 (HKK56_20145) - 4511077..4511901 (+) 825 WP_029299407.1 alpha/beta hydrolase -
  HKK56_RS20150 (HKK56_20150) ssb 4511981..4512496 (-) 516 WP_017849542.1 single-stranded DNA-binding protein Machinery gene
  HKK56_RS20155 (HKK56_20155) - 4512506..4513900 (-) 1395 WP_029299405.1 MFS transporter -
  HKK56_RS20160 (HKK56_20160) uvrA 4514081..4516915 (+) 2835 WP_169390246.1 excinuclease ABC subunit UvrA -
  HKK56_RS20165 (HKK56_20165) bfr 4516983..4517447 (-) 465 WP_029299402.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18989.15 Da        Isoelectric Point: 5.9455

>NTDB_id=441817 HKK56_RS20150 WP_017849542.1 4511981..4512496(-) (ssb) [Pseudomonas sp. ADAK20]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAA
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=441817 HKK56_RS20150 WP_017849542.1 4511981..4512496(-) (ssb) [Pseudomonas sp. ADAK20]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTATCGATGTTCGGCAAGGTTGCAGAGATCGCCGGTGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGTATGTCCAACTCGGCGCCGCGTCCACAGC
AGTCGCGTCCGCAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGTCCAGCGCCACAGCAGGCAGCACCGCAGCCGGCCGCT
GACTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I3WGC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.286

100

0.596
  ssb Neisseria gonorrhoeae MS11

48.315

100

0.503
  ssb Glaesserella parasuis strain SC1401

44.792

100

0.503
  ssb Neisseria meningitidis MC58

46.591

100

0.48