Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   IRJ24_RS19345 Genome accession   NZ_CP064093
Coordinates   3700971..3701420 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain N1282-4at     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3695971..3706420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS19315 sepM 3696050..3697075 (-) 1026 WP_003245451.1 protease DdcP Regulator
  IRJ24_RS19320 ylbK 3697077..3697859 (-) 783 WP_003232221.1 patatin family protein -
  IRJ24_RS19325 spoVV 3698040..3699266 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  IRJ24_RS19330 coaD 3699277..3699762 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  IRJ24_RS19335 rsmD 3699767..3700321 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IRJ24_RS19340 ylbG 3700644..3700916 (-) 273 WP_009967171.1 YlbG family protein -
  IRJ24_RS19345 ylbF 3700971..3701420 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  IRJ24_RS19350 ylbE 3701536..3701775 (-) 240 WP_003232231.1 YlbE-like family protein -
  IRJ24_RS19355 ylbD 3701791..3702189 (-) 399 WP_003232233.1 YlbD family protein -
  IRJ24_RS19360 ylbC 3702421..3703461 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  IRJ24_RS19365 ylbB 3703545..3703991 (-) 447 WP_003221362.1 CBS domain-containing protein -
  IRJ24_RS19370 ylbA 3704131..3704493 (+) 363 WP_003232238.1 YugN family protein -
  IRJ24_RS19375 ctaG 3704525..3705418 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  IRJ24_RS19380 ctaF 3705445..3705777 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  IRJ24_RS19385 ctaE 3705780..3706403 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=441790 IRJ24_RS19345 WP_003221370.1 3700971..3701420(-) (ylbF) [Bacillus subtilis strain N1282-4at]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=441790 IRJ24_RS19345 WP_003221370.1 3700971..3701420(-) (ylbF) [Bacillus subtilis strain N1282-4at]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1