Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HKK58_RS16405 Genome accession   NZ_CP052856
Coordinates   3644370..3644897 (-) Length   175 a.a.
NCBI ID   WP_010467282.1    Uniprot ID   A0A6L5BQP5
Organism   Pseudomonas sp. ADAK22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3639370..3649897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK58_RS16380 (HKK58_16380) - 3639505..3640260 (-) 756 WP_106580222.1 alpha/beta fold hydrolase -
  HKK58_RS16385 (HKK58_16385) - 3640250..3641359 (-) 1110 WP_169367708.1 DUF3182 family protein -
  HKK58_RS16390 (HKK58_16390) - 3641599..3642162 (+) 564 WP_169367709.1 cysteine hydrolase family protein -
  HKK58_RS16395 (HKK58_16395) tam 3642184..3642945 (-) 762 WP_124418570.1 trans-aconitate 2-methyltransferase -
  HKK58_RS16400 (HKK58_16400) - 3643048..3643956 (+) 909 WP_106580218.1 LysR family transcriptional regulator -
  HKK58_RS16405 (HKK58_16405) ssb 3644370..3644897 (-) 528 WP_010467282.1 single-stranded DNA-binding protein Machinery gene
  HKK58_RS16410 (HKK58_16410) - 3644907..3646301 (-) 1395 WP_106580217.1 MFS transporter -
  HKK58_RS16415 (HKK58_16415) uvrA 3646480..3649314 (+) 2835 WP_119742783.1 excinuclease ABC subunit UvrA -
  HKK58_RS16420 (HKK58_16420) bfr 3649380..3649844 (-) 465 WP_015886133.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19396.56 Da        Isoelectric Point: 5.9314

>NTDB_id=441764 HKK58_RS16405 WP_010467282.1 3644370..3644897(-) (ssb) [Pseudomonas sp. ADAK22]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPPPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=441764 HKK58_RS16405 WP_010467282.1 3644370..3644897(-) (ssb) [Pseudomonas sp. ADAK22]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACTGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGCGTGTCGATGTTCGGCAAGGTTGCAGAGATCGCCGGCGAGTACCTGCGTAAAGGTTCGCAGGTTTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAGCAGGGCGACCAACAAGGCGGGGGCAACAACTACCAGCAGTCCGCTCCGGCCC
CACGCCAGCAGGCTCCGCGTCCGCAGCAGTCGGCACCGCAGCAGTCGCGTCAGGCGCCACCTCCACAACAGGCCGCTCCA
CAGCCTGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BQP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.065

100

0.6
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.509
  ssb Neisseria meningitidis MC58

47.514

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.514

100

0.491