Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IRJ24_RS13610 Genome accession   NZ_CP064093
Coordinates   2609503..2610630 (-) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis strain N1282-4at     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2604503..2615630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS13575 - 2605435..2605914 (+) 480 WP_004399085.1 hypothetical protein -
  IRJ24_RS13580 - 2605930..2606292 (+) 363 WP_003229947.1 hypothetical protein -
  IRJ24_RS13585 - 2606289..2606435 (-) 147 WP_009967791.1 hypothetical protein -
  IRJ24_RS13590 yqcF 2606553..2607131 (-) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  IRJ24_RS13595 yqcG 2607146..2608741 (-) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  IRJ24_RS13600 - 2609111..2609269 (-) 159 WP_003245945.1 hypothetical protein -
  IRJ24_RS13605 phrE 2609379..2609513 (-) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  IRJ24_RS13610 rapC 2609503..2610630 (-) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  IRJ24_RS13615 yqcI 2611073..2611837 (+) 765 WP_004398670.1 YqcI/YcgG family protein -
  IRJ24_RS13620 arsR 2612209..2612526 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  IRJ24_RS13625 yqcK 2612587..2613027 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  IRJ24_RS13630 acr3 2613050..2614090 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  IRJ24_RS13635 arsC 2614102..2614521 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  IRJ24_RS13640 - 2614876..2615054 (+) 179 Protein_2613 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=441749 IRJ24_RS13610 WP_004398842.1 2609503..2610630(-) (rapC) [Bacillus subtilis strain N1282-4at]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=441749 IRJ24_RS13610 WP_004398842.1 2609503..2610630(-) (rapC) [Bacillus subtilis strain N1282-4at]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384