Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IRJ24_RS12380 Genome accession   NZ_CP064093
Coordinates   2407307..2408002 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain N1282-4at     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2402307..2413002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ24_RS12360 folC 2403238..2404530 (+) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  IRJ24_RS12365 comC 2404670..2405416 (+) 747 WP_010886586.1 A24 family peptidase Machinery gene
  IRJ24_RS12370 spoIIB 2405550..2406548 (+) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  IRJ24_RS12375 maf 2406701..2407270 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IRJ24_RS12380 ysxA/radC 2407307..2408002 (+) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  IRJ24_RS12385 mreB 2408094..2409107 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IRJ24_RS12390 mreC 2409138..2410010 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  IRJ24_RS12395 mreD 2410007..2410525 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  IRJ24_RS12400 minC 2410578..2411258 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  IRJ24_RS12405 minD 2411260..2412066 (+) 807 WP_004398624.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=441741 IRJ24_RS12380 WP_003246034.1 2407307..2408002(+) (ysxA/radC) [Bacillus subtilis strain N1282-4at]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=441741 IRJ24_RS12380 WP_003246034.1 2407307..2408002(+) (ysxA/radC) [Bacillus subtilis strain N1282-4at]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424