Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HKJ32_RS03200 | Genome accession | NZ_CP052854 |
| Coordinates | 738043..738489 (-) | Length | 148 a.a. |
| NCBI ID | WP_021358633.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain LM10 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 731214..755623 | 738043..738489 | within | 0 |
Gene organization within MGE regions
Location: 731214..755623
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HKJ32_RS03160 (HKJ32_03245) | - | 731214..732044 (-) | 831 | WP_004083974.1 | ABC transporter ATP-binding protein | - |
| HKJ32_RS03165 (HKJ32_03250) | - | 732050..733168 (-) | 1119 | WP_004083972.1 | ABC transporter permease | - |
| HKJ32_RS03170 (HKJ32_03255) | - | 733278..734540 (+) | 1263 | WP_012337721.1 | threonine/serine exporter family protein | - |
| HKJ32_RS03175 (HKJ32_03265) | - | 735181..735387 (+) | 207 | WP_071869858.1 | hypothetical protein | - |
| HKJ32_RS03180 (HKJ32_03270) | - | 735451..735663 (+) | 213 | WP_228304324.1 | hypothetical protein | - |
| HKJ32_RS03185 (HKJ32_03275) | - | 735727..735936 (+) | 210 | WP_225621843.1 | hypothetical protein | - |
| HKJ32_RS03190 (HKJ32_03280) | - | 736577..737749 (-) | 1173 | WP_004083967.1 | integrase | - |
| HKJ32_RS03195 (HKJ32_03285) | - | 737749..738021 (-) | 273 | WP_004083966.1 | hypothetical protein | - |
| HKJ32_RS03200 (HKJ32_03290) | ssb | 738043..738489 (-) | 447 | WP_021358633.1 | single-stranded DNA-binding protein | Machinery gene |
| HKJ32_RS03205 (HKJ32_03295) | - | 738473..738943 (-) | 471 | WP_076613218.1 | DUF5131 family protein | - |
| HKJ32_RS03210 (HKJ32_03300) | - | 738936..739166 (-) | 231 | WP_021358635.1 | hypothetical protein | - |
| HKJ32_RS03215 (HKJ32_03305) | - | 739166..739699 (-) | 534 | WP_004083962.1 | hypothetical protein | - |
| HKJ32_RS03220 (HKJ32_03310) | - | 739696..740289 (-) | 594 | WP_004083960.1 | DapH/DapD/GlmU-related protein | - |
| HKJ32_RS03225 (HKJ32_03315) | - | 740382..740915 (-) | 534 | WP_012337723.1 | pilin | - |
| HKJ32_RS03230 (HKJ32_03320) | - | 741048..741314 (-) | 267 | WP_004084112.1 | hypothetical protein | - |
| HKJ32_RS03235 (HKJ32_03325) | - | 741311..741589 (-) | 279 | WP_004083957.1 | hypothetical protein | - |
| HKJ32_RS03240 (HKJ32_03330) | - | 741586..741807 (-) | 222 | WP_021358638.1 | hypothetical protein | - |
| HKJ32_RS03245 (HKJ32_03335) | - | 741804..742262 (-) | 459 | WP_004084109.1 | hypothetical protein | - |
| HKJ32_RS03250 (HKJ32_03340) | - | 742259..742723 (-) | 465 | WP_021358639.1 | DUF1566 domain-containing protein | - |
| HKJ32_RS03255 (HKJ32_03345) | - | 742720..743217 (-) | 498 | WP_021358640.1 | hypothetical protein | - |
| HKJ32_RS03260 (HKJ32_03350) | - | 743207..743830 (+) | 624 | WP_004083954.1 | hypothetical protein | - |
| HKJ32_RS03265 (HKJ32_03355) | - | 743932..744333 (-) | 402 | WP_004084104.1 | hypothetical protein | - |
| HKJ32_RS03270 (HKJ32_03360) | - | 744332..744820 (+) | 489 | WP_238836475.1 | CHC2 zinc finger domain-containing protein | - |
| HKJ32_RS03275 (HKJ32_03365) | - | 744756..745400 (+) | 645 | WP_228762222.1 | terminase gpA endonuclease subunit | - |
| HKJ32_RS03280 (HKJ32_03370) | - | 745477..745713 (+) | 237 | WP_012337727.1 | hypothetical protein | - |
| HKJ32_RS03285 (HKJ32_03375) | - | 745710..746225 (+) | 516 | WP_004083947.1 | phage portal protein | - |
| HKJ32_RS12340 | - | 746390..746632 (+) | 243 | WP_228762223.1 | hypothetical protein | - |
| HKJ32_RS12750 | - | 746646..746768 (+) | 123 | WP_324187556.1 | hypothetical protein | - |
| HKJ32_RS03295 (HKJ32_03385) | - | 746759..747187 (+) | 429 | WP_004083945.1 | hypothetical protein | - |
| HKJ32_RS03300 (HKJ32_03390) | - | 747184..747420 (+) | 237 | WP_004083943.1 | hypothetical protein | - |
| HKJ32_RS03305 (HKJ32_03395) | - | 747410..750235 (+) | 2826 | Protein_641 | hypothetical protein | - |
| HKJ32_RS03310 (HKJ32_03400) | - | 750228..750740 (+) | 513 | WP_169709957.1 | hypothetical protein | - |
| HKJ32_RS03315 (HKJ32_03405) | - | 750744..751163 (+) | 420 | WP_004083636.1 | hypothetical protein | - |
| HKJ32_RS03320 (HKJ32_03410) | - | 751239..751934 (+) | 696 | WP_004086766.1 | hypothetical protein | - |
| HKJ32_RS12685 | - | 751994..752122 (-) | 129 | WP_256704593.1 | hypothetical protein | - |
| HKJ32_RS03330 (HKJ32_03420) | - | 752170..752277 (+) | 108 | Protein_646 | DNA adenine methylase | - |
| HKJ32_RS03335 (HKJ32_03425) | - | 752329..752955 (+) | 627 | WP_038230952.1 | IS607 family transposase | - |
| HKJ32_RS03340 (HKJ32_03430) | - | 752949..754145 (+) | 1197 | WP_004083925.1 | RNA-guided endonuclease TnpB family protein | - |
| HKJ32_RS03345 (HKJ32_03435) | - | 754152..754856 (+) | 705 | WP_154123795.1 | DNA adenine methylase | - |
| HKJ32_RS03350 (HKJ32_03440) | - | 755059..755352 (-) | 294 | WP_234759377.1 | BrnA antitoxin family protein | - |
| HKJ32_RS03355 (HKJ32_03445) | - | 755336..755623 (-) | 288 | WP_004083921.1 | BrnT family toxin | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16536.38 Da Isoelectric Point: 6.4871
>NTDB_id=441725 HKJ32_RS03200 WP_021358633.1 738043..738489(-) (ssb) [Xylella fastidiosa subsp. multiplex strain LM10]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=441725 HKJ32_RS03200 WP_021358633.1 738043..738489(-) (ssb) [Xylella fastidiosa subsp. multiplex strain LM10]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.477 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
38.728 |
100 |
0.453 |
| ssb | Neisseria gonorrhoeae MS11 |
38.728 |
100 |
0.453 |
| ssb | Glaesserella parasuis strain SC1401 |
41.304 |
93.243 |
0.385 |