Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FYB63_RS00435 Genome accession   NZ_CP052849
Coordinates   78519..79031 (+) Length   170 a.a.
NCBI ID   WP_005017406.1    Uniprot ID   A0A158M7H3
Organism   Bordetella holmesii strain J790     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 79626..86443 78519..79031 flank 595


Gene organization within MGE regions


Location: 78519..86443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYB63_RS00435 (FYB63_00435) ssb 78519..79031 (+) 513 WP_005017406.1 single-stranded DNA-binding protein Machinery gene
  FYB63_RS00440 (FYB63_00445) - 79626..79915 (+) 290 Protein_86 transposase -
  FYB63_RS00445 (FYB63_00450) - 80000..80950 (-) 951 WP_005012650.1 IS481-like element IS481 family transposase -
  FYB63_RS00450 (FYB63_00455) - 81058..81528 (+) 471 Protein_88 integrase core domain-containing protein -
  FYB63_RS00455 (FYB63_00460) asnB 81542..83197 (-) 1656 WP_005017410.1 asparagine synthase (glutamine-hydrolyzing) -
  FYB63_RS00460 (FYB63_00465) - 83309..84355 (+) 1047 WP_005020301.1 glycosyltransferase -
  FYB63_RS00465 (FYB63_00470) - 84345..85412 (+) 1068 WP_005017414.1 glycosyltransferase -
  FYB63_RS00470 (FYB63_00475) - 85494..86443 (+) 950 Protein_92 IS481-like element IS481 family transposase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18356.46 Da        Isoelectric Point: 5.9702

>NTDB_id=441649 FYB63_RS00435 WP_005017406.1 78519..79031(+) (ssb) [Bordetella holmesii strain J790]
MASVNKVILVGNLGRDPEVRYSPDGAAICNLSLATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDGAEGGGFGGGGGYDEAPRQQRAPAQRPAPAQRQAPAAAAPMGGGAAN
LADMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=441649 FYB63_RS00435 WP_005017406.1 78519..79031(+) (ssb) [Bordetella holmesii strain J790]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGGCGCGACCCCGAGGTCCGCTATAGCCCGGACGGCGCGGC
AATCTGCAATCTTTCTCTGGCTACCACGTCGCAGTGGAAAGACAAGGCCTCCGGCGAGCGCCGCGAAGAAACCGAATGGC
ATCGCGTCGTCATGTACAACCGCCTGGCGGAAATCGCTGGCGAGTACCTGAAGAAAGGCCGTTCGGTTTATATCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACACCGGCGCTGACCGCTACAGCACCGAAATCGTCGCTGACCAGATGCA
GATGCTGGGCGGGCGTGATGGTGCCGAAGGCGGCGGTTTCGGCGGCGGTGGTGGTTACGACGAGGCGCCGCGCCAGCAAC
GTGCGCCTGCGCAACGCCCGGCACCGGCTCAGCGCCAGGCGCCGGCCGCAGCCGCGCCCATGGGCGGCGGCGCGGCCAAT
CTGGCCGATATGGACGACGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A158M7H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.872

100

0.571
  ssb Glaesserella parasuis strain SC1401

50

100

0.559
  ssb Neisseria gonorrhoeae MS11

50.829

100

0.541
  ssb Neisseria meningitidis MC58

50.276

100

0.535