Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHA24_RS22735 Genome accession   NZ_CP052845
Coordinates   4779341..4779850 (-) Length   169 a.a.
NCBI ID   WP_029579941.1    Uniprot ID   -
Organism   Bordetella hinzii strain 2B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4767753..4779276 4779341..4779850 flank 65


Gene organization within MGE regions


Location: 4767753..4779850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA24_RS22705 (HHA24_22700) - 4767753..4769195 (+) 1443 WP_029579935.1 polysaccharide ABC transporter ATP-binding protein -
  HHA24_RS22710 (HHA24_22705) - 4769207..4770109 (+) 903 WP_157736113.1 class I SAM-dependent methyltransferase -
  HHA24_RS22715 (HHA24_22710) - 4770113..4772719 (+) 2607 WP_215619708.1 glycosyltransferase family protein -
  HHA24_RS22720 (HHA24_22715) asnB 4772740..4774647 (+) 1908 WP_029579938.1 asparagine synthase (glutamine-hydrolyzing) -
  HHA24_RS22725 (HHA24_22720) asnB 4774595..4776571 (+) 1977 WP_230586926.1 asparagine synthase (glutamine-hydrolyzing) -
  HHA24_RS22730 (HHA24_22725) - 4776655..4779276 (+) 2622 WP_029579940.1 glycosyltransferase -
  HHA24_RS22735 (HHA24_22730) ssb 4779341..4779850 (-) 510 WP_029579941.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18289.32 Da        Isoelectric Point: 5.9656

>NTDB_id=441603 HHA24_RS22735 WP_029579941.1 4779341..4779850(-) (ssb) [Bordetella hinzii strain 2B3]
MASVNKVILVGNLGRDPEVRYSPDGAAICNLSLATTSQWKDKTSGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDGGDGGNYGGGGGGYDEAPRQQRAAAQRPAPAQRPAPAAPMGGGAANL
ADMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=441603 HHA24_RS22735 WP_029579941.1 4779341..4779850(-) (ssb) [Bordetella hinzii strain 2B3]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGGCGCGACCCCGAGGTCCGCTATAGCCCGGACGGCGCGGC
AATCTGCAATCTTTCGCTGGCCACCACCTCGCAATGGAAGGACAAGACCTCCGGCGAGCGCCGCGAAGAGACCGAATGGC
ATCGCGTCGTCATGTACAACCGCTTGGCCGAGATCGCCGGCGAATACCTCAAGAAAGGCCGCTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGATACCGGCGCCGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGACGGCGGTGACGGCGGCAACTATGGCGGCGGTGGCGGCGGCTACGACGAGGCGCCGCGCCAGC
AGCGCGCCGCGGCCCAGCGTCCGGCCCCTGCCCAGCGCCCGGCCCCGGCCGCGCCCATGGGCGGCGGCGCGGCCAACCTC
GCGGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.562
  ssb Vibrio cholerae strain A1552

51.075

100

0.562
  ssb Neisseria gonorrhoeae MS11

51.934

100

0.556
  ssb Neisseria meningitidis MC58

51.381

100

0.55