Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   SAMSHR1132_RS07255 Genome accession   NC_016941
Coordinates   1542886..1543860 (-) Length   324 a.a.
NCBI ID   WP_000697234.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1537886..1548860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS07215 (SAMSHR1132_13770) gcvT 1538386..1539477 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  SAMSHR1132_RS07220 (SAMSHR1132_13780) - 1539634..1540158 (-) 525 WP_000422579.1 shikimate kinase -
  SAMSHR1132_RS07225 - 1540145..1540294 (-) 150 WP_072324192.1 hypothetical protein -
  SAMSHR1132_RS07230 (SAMSHR1132_13800) comGF 1540393..1540890 (-) 498 WP_072467206.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAMSHR1132_RS07235 (SAMSHR1132_13810) comGE 1540808..1541107 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  SAMSHR1132_RS07240 (SAMSHR1132_13820) comGD 1541094..1541540 (-) 447 WP_072467207.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAMSHR1132_RS07245 (SAMSHR1132_13830) comGC 1541518..1541829 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  SAMSHR1132_RS07250 (SAMSHR1132_13840) comGB 1541844..1542914 (-) 1071 WP_000868162.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAMSHR1132_RS07255 (SAMSHR1132_13850) comGA 1542886..1543860 (-) 975 WP_000697234.1 competence type IV pilus ATPase ComGA Machinery gene
  SAMSHR1132_RS07260 (SAMSHR1132_13860) - 1543912..1544535 (-) 624 WP_001222932.1 MBL fold metallo-hydrolase -
  SAMSHR1132_RS07265 (SAMSHR1132_13870) - 1544532..1544861 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  SAMSHR1132_RS07270 (SAMSHR1132_13880) - 1544861..1545847 (-) 987 WP_000161316.1 ROK family glucokinase -
  SAMSHR1132_RS07275 - 1545847..1546047 (-) 201 WP_000087563.1 YqgQ family protein -
  SAMSHR1132_RS07280 (SAMSHR1132_13890) - 1546028..1547491 (-) 1464 WP_001017853.1 rhomboid family intramembrane serine protease -
  SAMSHR1132_RS07285 (SAMSHR1132_13900) - 1547503..1548042 (-) 540 WP_096001342.1 5-formyltetrahydrofolate cyclo-ligase -
  SAMSHR1132_RS07290 (SAMSHR1132_13910) rpmG 1548254..1548403 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36839.96 Da        Isoelectric Point: 8.8423

>NTDB_id=44160 SAMSHR1132_RS07255 WP_000697234.1 1542886..1543860(-) (comGA) [Staphylococcus argenteus]
MKILFQEIINKAIVMKASDVHFIPVHNEVSIKFRINDNLEQYEEIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQYFKQTKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNEKAGINYVNSFKAILRCDPDVILIGEIRDKEVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLQYFFSHNHSLPTSFKKLETKLDDMTKAGVICESTM
DTYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=44160 SAMSHR1132_RS07255 WP_000697234.1 1542886..1543860(-) (comGA) [Staphylococcus argenteus]
ATGAAGATATTATTTCAAGAGATAATCAACAAAGCGATAGTAATGAAAGCGAGTGATGTCCATTTTATTCCTGTTCATAA
TGAAGTGAGTATTAAATTTCGTATAAATGACAATTTGGAACAGTATGAAGAAATTGGAAATAGTATTTATCAAAAGCTAT
TAGTTTATATGAAATTTCAAGCTGGTCTCGATGTATCTACGCAACAAGTTGCTCAGAGTGGTCGTTATAGCTACCATTTT
AATAAAATTTATTTTTTAAGAATTTCAACATTGCCATTATCACTTGGTCAAGAAAGTTGTGTGATAAGAATAGTTCCTCA
ATATTTTAAACAAACTAAATCAACATATAAATTTAATGATTTTAAACATTTAATGAATAAGAAACAAGGCTTATTGTTAT
TTAGTGGTCCGACGGGTTCAGGTAAAAGTACTTTAATGTATCAAATGGTCTCATACGCTAACAAAGCGTTAAACTTAAAT
GTTATATCTATTGAAGACCCAGTAGAAATGCAAATTCCTGGAATAGTTCAAATAAACGTAAATGAAAAAGCGGGGATTAA
CTATGTCAATTCATTTAAAGCGATATTAAGGTGTGACCCAGATGTTATTCTTATAGGGGAAATTAGAGATAAAGAAGTAG
CTAAATGTGTCATCCAAGCAAGTTTAAGTGGTCATCTAGTACTCACTACCTTACATGCAACAGATTGTAAAGGTGCAATT
TTAAGATTACTAGAAATGGGGATTTCAGTACAAGAACTAATACAAGCAACTAATTTAATTATAAATCAAAGACTTGTTAC
TACAATTAAACAGCAACGACAATTAGTGTGTGAAATTTTATCACAACAACAACTTCAGTATTTCTTCTCGCATAATCATT
CACTACCTACCTCATTTAAAAAACTAGAAACAAAGCTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAAGTACAATG
GATACGTATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

95.679

100

0.957
  comGA Staphylococcus aureus N315

95.679

100

0.957

Multiple sequence alignment