Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHA25_RS22750 Genome accession   NZ_CP052844
Coordinates   4779180..4779689 (-) Length   169 a.a.
NCBI ID   WP_029579941.1    Uniprot ID   -
Organism   Bordetella hinzii strain 2G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4774180..4784689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA25_RS22740 (HHA25_22735) asnB 4774434..4776410 (+) 1977 WP_230586926.1 asparagine synthase (glutamine-hydrolyzing) -
  HHA25_RS22745 (HHA25_22740) - 4776494..4779115 (+) 2622 WP_029579940.1 glycosyltransferase -
  HHA25_RS22750 (HHA25_22745) ssb 4779180..4779689 (-) 510 WP_029579941.1 single-stranded DNA-binding protein Machinery gene
  HHA25_RS22755 (HHA25_22750) - 4779951..4781135 (-) 1185 WP_029579942.1 MFS transporter -
  HHA25_RS22760 (HHA25_22755) uvrA 4781315..4784173 (+) 2859 WP_029579943.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18289.32 Da        Isoelectric Point: 5.9656

>NTDB_id=441588 HHA25_RS22750 WP_029579941.1 4779180..4779689(-) (ssb) [Bordetella hinzii strain 2G1]
MASVNKVILVGNLGRDPEVRYSPDGAAICNLSLATTSQWKDKTSGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDGGDGGNYGGGGGGYDEAPRQQRAAAQRPAPAQRPAPAAPMGGGAANL
ADMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=441588 HHA25_RS22750 WP_029579941.1 4779180..4779689(-) (ssb) [Bordetella hinzii strain 2G1]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTGGGGCGCGACCCCGAGGTCCGCTATAGCCCGGACGGCGCGGC
AATCTGCAATCTTTCGCTGGCCACCACCTCGCAATGGAAGGACAAGACCTCCGGCGAGCGCCGCGAAGAGACCGAATGGC
ATCGCGTCGTCATGTACAACCGCTTGGCCGAGATCGCCGGCGAATACCTCAAGAAAGGCCGCTCGGTCTACATCGAGGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGATACCGGCGCCGACCGCTACAGCACCGAAATCGTCGCCGACCAGATGCA
GATGCTGGGCGGCCGCGACGGCGGTGACGGCGGCAACTATGGCGGCGGTGGCGGCGGCTACGACGAGGCGCCGCGCCAGC
AGCGCGCCGCGGCCCAGCGTCCGGCCCCTGCCCAGCGCCCGGCCCCGGCCGCGCCCATGGGCGGCGGCGCGGCCAACCTC
GCGGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.562
  ssb Vibrio cholerae strain A1552

51.075

100

0.562
  ssb Neisseria gonorrhoeae MS11

51.934

100

0.556
  ssb Neisseria meningitidis MC58

51.381

100

0.55