Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SAMSHR1132_RS07240 Genome accession   NC_016941
Coordinates   1541094..1541540 (-) Length   148 a.a.
NCBI ID   WP_072467207.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536094..1546540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS07210 (SAMSHR1132_13760) gcvPA 1537021..1538367 (-) 1347 WP_000019677.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  SAMSHR1132_RS07215 (SAMSHR1132_13770) gcvT 1538386..1539477 (-) 1092 WP_000093342.1 glycine cleavage system aminomethyltransferase GcvT -
  SAMSHR1132_RS07220 (SAMSHR1132_13780) - 1539634..1540158 (-) 525 WP_000422579.1 shikimate kinase -
  SAMSHR1132_RS07225 - 1540145..1540294 (-) 150 WP_072324192.1 hypothetical protein -
  SAMSHR1132_RS07230 (SAMSHR1132_13800) comGF 1540393..1540890 (-) 498 WP_072467206.1 competence type IV pilus minor pilin ComGF Machinery gene
  SAMSHR1132_RS07235 (SAMSHR1132_13810) comGE 1540808..1541107 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  SAMSHR1132_RS07240 (SAMSHR1132_13820) comGD 1541094..1541540 (-) 447 WP_072467207.1 competence type IV pilus minor pilin ComGD Machinery gene
  SAMSHR1132_RS07245 (SAMSHR1132_13830) comGC 1541518..1541829 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  SAMSHR1132_RS07250 (SAMSHR1132_13840) comGB 1541844..1542914 (-) 1071 WP_000868162.1 competence type IV pilus assembly protein ComGB Machinery gene
  SAMSHR1132_RS07255 (SAMSHR1132_13850) comGA 1542886..1543860 (-) 975 WP_000697234.1 competence type IV pilus ATPase ComGA Machinery gene
  SAMSHR1132_RS07260 (SAMSHR1132_13860) - 1543912..1544535 (-) 624 WP_001222932.1 MBL fold metallo-hydrolase -
  SAMSHR1132_RS07265 (SAMSHR1132_13870) - 1544532..1544861 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  SAMSHR1132_RS07270 (SAMSHR1132_13880) - 1544861..1545847 (-) 987 WP_000161316.1 ROK family glucokinase -
  SAMSHR1132_RS07275 - 1545847..1546047 (-) 201 WP_000087563.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17333.56 Da        Isoelectric Point: 10.2250

>NTDB_id=44157 SAMSHR1132_RS07240 WP_072467207.1 1541094..1541540(-) (comGD) [Staphylococcus argenteus]
MEKLLQIRKQQAFTLIEMVVVMMIVSCFLLLTMTSNSLKDFKVINDESNIISLITELNYIKSKAIANQSFINVRFYENSD
TIKVVEKNKIYYLKLKVGKIINVAKVDSIYFDKHGNINKFGSISIEKNNKVYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=44157 SAMSHR1132_RS07240 WP_072467207.1 1541094..1541540(-) (comGD) [Staphylococcus argenteus]
ATGGAGAAGCTATTGCAAATTAGAAAACAACAAGCATTTACACTTATTGAAATGGTTGTTGTAATGATGATTGTTAGTTG
TTTTCTTCTATTGACTATGACATCAAATAGTTTAAAAGATTTCAAAGTTATCAATGATGAATCGAATATCATTTCATTAA
TTACTGAATTGAATTATATTAAATCAAAGGCAATTGCTAATCAAAGTTTTATTAATGTAAGATTTTATGAAAATAGTGAC
ACAATTAAAGTAGTTGAGAAAAATAAGATCTATTATTTAAAGTTAAAAGTTGGAAAAATAATTAATGTTGCGAAAGTGGA
TTCGATTTATTTTGATAAACATGGAAACATTAATAAGTTTGGGAGCATTTCGATTGAAAAAAACAACAAGGTTTATAGAA
TAATATTTCATATTGAAAAAGGAAGAATTCGTTATGAAAAATTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

79.054

100

0.791
  comGD Staphylococcus aureus N315

79.054

100

0.791

Multiple sequence alignment