Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   B739_RS10755 Genome accession   NC_018609
Coordinates   2279103..2280380 (-) Length   425 a.a.
NCBI ID   WP_080588269.1    Uniprot ID   -
Organism   Riemerella anatipestifer RA-CH-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2274103..2285380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B739_RS10730 (B739_2177) - 2274604..2276352 (+) 1749 WP_014938996.1 TrkH family potassium uptake protein -
  B739_RS10735 (B739_2178) - 2276360..2277052 (+) 693 WP_014938997.1 TrkA family potassium uptake protein -
  B739_RS10740 (B739_2179) - 2277056..2277676 (+) 621 WP_014938998.1 CoA pyrophosphatase -
  B739_RS10745 (B739_2180) - 2277705..2278511 (+) 807 WP_004917734.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  B739_RS10750 (B739_2181) - 2278495..2279106 (+) 612 WP_004917730.1 L-threonylcarbamoyladenylate synthase -
  B739_RS10755 (B739_2182) rarA 2279103..2280380 (-) 1278 WP_080588269.1 replication-associated recombination protein A Machinery gene
  B739_RS11210 yidD 2280460..2280714 (+) 255 WP_080588265.1 membrane protein insertion efficiency factor YidD -
  B739_RS10760 (B739_2184) lgt 2280722..2281573 (+) 852 WP_014939001.1 prolipoprotein diacylglyceryl transferase -
  B739_RS10765 (B739_2185) mscL 2281714..2282085 (+) 372 WP_014939002.1 large conductance mechanosensitive channel protein MscL -
  B739_RS10770 (B739_2186) - 2282160..2282816 (+) 657 WP_014939003.1 YggS family pyridoxal phosphate-dependent enzyme -
  B739_RS10775 (B739_2187) - 2282853..2284037 (+) 1185 WP_004917716.1 sigma-54 dependent transcriptional regulator -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47578.26 Da        Isoelectric Point: 6.9196

>NTDB_id=44156 B739_RS10755 WP_080588269.1 2279103..2280380(-) (rarA) [Riemerella anatipestifer RA-CH-1]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLETDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDEAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSETILKVLQETIPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEALALAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGSFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=44156 B739_RS10755 WP_080588269.1 2279103..2280380(-) (rarA) [Riemerella anatipestifer RA-CH-1]
TTGAATTCAAATATTCCTTTAGCAGAGAAATTACGCCCAAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGATGGAACTATAAGAAAAATGCTGGAAACCGACCGGCTTAATTCTCTGATTTTATGGGGCCCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTGAAA
GAGGTAAGAGAAGTGATAGATGAAGCCAAGAAGCAACACTTATTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGATTCTGATAGGAGCAACTA
CCGAAAATCCTAGTTTTGAGGTCGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAGCTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGACTATTCTGAAAGTTTTACAAGAAACTATACCTGTTTATGATAAAAATGGAGAG
CAGCATTATGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTGGGGGGCGAAGATATTAAGTTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGCTTGGCTA
ATCCTAACGCTCTTACAATGGCTAACAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGTTGGCGTTGGC
GAAAAAAACAGCTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAGTTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(187-254)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.786

95.765

0.391

Multiple sequence alignment