Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA267_RS11045 Genome accession   NZ_CP052766
Coordinates   2503053..2503613 (+) Length   186 a.a.
NCBI ID   WP_075607426.1    Uniprot ID   -
Organism   Alteromonas pelagimontana strain 5.12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2498053..2508613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA267_RS11040 (CA267_011050) - 2499643..2502768 (+) 3126 WP_083638195.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  CA267_RS11045 (CA267_011055) ssb 2503053..2503613 (+) 561 WP_075607426.1 single-stranded DNA-binding protein Machinery gene
  CA267_RS11050 (CA267_011060) - 2503685..2504944 (-) 1260 WP_075607425.1 cytochrome P450 -
  CA267_RS11055 (CA267_011065) - 2505255..2505470 (-) 216 WP_075607424.1 YrhK family protein -
  CA267_RS11060 (CA267_011070) - 2505487..2505954 (-) 468 WP_321174005.1 carboxymuconolactone decarboxylase family protein -
  CA267_RS11065 (CA267_011075) - 2505997..2506806 (-) 810 WP_075607422.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20739.61 Da        Isoelectric Point: 5.2869

>NTDB_id=441545 CA267_RS11045 WP_075607426.1 2503053..2503613(+) (ssb) [Alteromonas pelagimontana strain 5.12]
MASKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRQENSGSAGGGYQQRPQNNSQGNQDYNQQGGYQQNSNRGSGQPQGGKPG
NQPNQGGQNKPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=441545 CA267_RS11045 WP_075607426.1 2503053..2503613(+) (ssb) [Alteromonas pelagimontana strain 5.12]
ATGGCAAGTAAAGGCGTGAATAAGGTCATTCTGGTAGGTAATCTGGGTAATGATCCTGAAGTGAGATACATGCCTAATGG
TAATGCCGTAGCTAACTTGAGTCTGGCTACCAGCGAGAGCTGGAAGGACCAACAGGGCCAAGTACAGGAACGCACTGAAT
GGCATCGGTTAACCATGTATCGTCGTCTGGCTGAAATTGCAGGTGAGTACCTGAAAAAAGGCTCTCAGATTTACGTTGAA
GGTAAGTTGCAAACGCGCAAGTGGCAGGATCAGCAAGGCCAGGACCGCTATACAACCGAAATTATTGTTGATCAAATGCA
AATGTTAGGCGGCCGCCAGGAAAACAGCGGTAGTGCTGGTGGTGGCTATCAGCAGCGTCCGCAGAATAATTCTCAAGGTA
ATCAGGATTATAATCAGCAAGGCGGATATCAACAAAATTCCAATCGGGGAAGTGGTCAACCGCAAGGCGGGAAACCAGGA
AATCAACCTAATCAGGGCGGCCAGAATAAACCCCCTATGGCAGAACCTGATTTTGACTTTGATGACGATATTCCGTTTTA
G

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.571

100

0.565
  ssb Glaesserella parasuis strain SC1401

55.914

100

0.559
  ssb Neisseria meningitidis MC58

50.276

97.312

0.489
  ssb Neisseria gonorrhoeae MS11

49.724

97.312

0.484