Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GAS18_RS12135 Genome accession   NZ_CP052132
Coordinates   2666967..2667527 (+) Length   186 a.a.
NCBI ID   WP_124836870.1    Uniprot ID   -
Organism   Burkholderia glumae strain HN2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2661967..2672527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAS18_RS12125 (GAS18_12145) uvrA 2662601..2665471 (-) 2871 WP_015877026.1 excinuclease ABC subunit UvrA -
  GAS18_RS12130 (GAS18_12150) - 2665700..2666896 (+) 1197 WP_015877025.1 MFS transporter -
  GAS18_RS12135 (GAS18_12155) ssb 2666967..2667527 (+) 561 WP_124836870.1 single-stranded DNA-binding protein Machinery gene
  GAS18_RS12140 (GAS18_12160) - 2667524..2667799 (-) 276 WP_171466719.1 hypothetical protein -
  GAS18_RS12145 (GAS18_12165) - 2667835..2668530 (+) 696 WP_017423026.1 hypothetical protein -
  GAS18_RS12150 (GAS18_12170) - 2668666..2669241 (+) 576 WP_124836868.1 hypothetical protein -
  GAS18_RS12155 (GAS18_12175) - 2669473..2670387 (+) 915 WP_015877022.1 LysR family transcriptional regulator -
  GAS18_RS12160 (GAS18_12180) - 2670771..2671238 (+) 468 WP_015877021.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 18908.60 Da        Isoelectric Point: 5.3243

>NTDB_id=441421 GAS18_RS12135 WP_124836870.1 2666967..2667527(+) (ssb) [Burkholderia glumae strain HN2]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGDFKEMTEWHRVAFFGRLAEIVNEYLKKGSSVYIEG
RLRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGGGGGGDDGYGGGGYGGGGGRGGDMERGGGGGRASGGGGGASRGG
SGGGGSSRPSQPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=441421 GAS18_RS12135 WP_124836870.1 2666967..2667527(+) (ssb) [Burkholderia glumae strain HN2]
ATGGCATCCGTCAACAAGGTCATTCTCGTCGGTAATCTGGGCGCCGACCCCGAAGTGCGCTACCTGCCGAGCGGCGACGC
GGTGGCGAACATCCGCCTCGCGACGACCGATCGCTACAAGGACAAGGCGAGCGGCGATTTCAAGGAAATGACCGAGTGGC
ACCGCGTGGCGTTCTTCGGCCGGCTGGCCGAGATCGTCAACGAGTACCTGAAGAAGGGCTCGTCGGTGTATATCGAAGGG
CGCCTGCGCACGCGCAAGTGGCAGGGCCAGGACGGCCAGGACCGTTACTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTGGGCGGCCGTGGTGGGTCGGGCGGCGGCGGCGGTGGTGGTGACGACGGTTACGGCGGCGGCGGCTACGGTGGTGGCG
GCGGTCGCGGCGGCGACATGGAGCGCGGCGGCGGCGGTGGCCGTGCTTCCGGCGGTGGCGGCGGTGCCTCGCGCGGCGGT
AGCGGCGGCGGTGGTTCGAGCCGTCCGAGCCAGCCGGCCGGTGGCGGATTCGACGAGATGGATGACGATATTCCGTTCTA
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.969

100

0.511
  ssb Glaesserella parasuis strain SC1401

44.615

100

0.468
  ssb Neisseria gonorrhoeae MS11

41.848

98.925

0.414
  ssb Neisseria meningitidis MC58

40.217

98.925

0.398