Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SAMSHR1132_RS01745 Genome accession   NC_016941
Coordinates   392307..392810 (+) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus argenteus     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 387307..397810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS01715 (SAMSHR1132_03330) - 388255..389100 (+) 846 WP_014373770.1 ParB/RepB/Spo0J family partition protein -
  SAMSHR1132_RS01720 (SAMSHR1132_03340) - 389246..390127 (+) 882 WP_000373078.1 mechanosensitive ion channel family protein -
  SAMSHR1132_RS01725 (SAMSHR1132_03350) - 390157..390360 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  SAMSHR1132_RS01730 (SAMSHR1132_03360) ychF 390372..391469 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  SAMSHR1132_RS01735 (SAMSHR1132_03370) - 391555..391746 (-) 192 WP_001046951.1 hypothetical protein -
  SAMSHR1132_RS01740 (SAMSHR1132_03380) rpsF 391990..392286 (+) 297 WP_001261459.1 30S ribosomal protein S6 -
  SAMSHR1132_RS01745 (SAMSHR1132_03390) ssbA 392307..392810 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  SAMSHR1132_RS01750 (SAMSHR1132_03400) rpsR 392862..393104 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  SAMSHR1132_RS01755 (SAMSHR1132_03410) - 393369..394307 (-) 939 WP_096001338.1 Abi family protein -
  SAMSHR1132_RS14190 - 394346..394771 (-) 426 Protein_342 hypothetical protein -
  SAMSHR1132_RS01765 (SAMSHR1132_03420) - 395159..396358 (-) 1200 WP_304363310.1 IS110 family transposase -
  SAMSHR1132_RS01770 (SAMSHR1132_03430) - 396837..397448 (+) 612 WP_000473145.1 exotoxin beta-grasp domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=44140 SAMSHR1132_RS01745 WP_000934799.1 392307..392810(+) (ssbA) [Staphylococcus argenteus]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=44140 SAMSHR1132_RS01745 WP_000934799.1 392307..392810(+) (ssbA) [Staphylococcus argenteus]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACATTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTATAATAACTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment