Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HED66_RS14185 Genome accession   NZ_CP051883
Coordinates   3125143..3125733 (+) Length   196 a.a.
NCBI ID   WP_169046932.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain SRW-OG1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3120143..3130733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED66_RS14175 uvrA 3121037..3123865 (-) 2829 WP_169046931.1 excinuclease ABC subunit UvrA -
  HED66_RS14180 - 3123961..3124623 (-) 663 WP_059114037.1 LuxR C-terminal-related transcriptional regulator -
  HED66_RS14185 ssb 3125143..3125733 (+) 591 WP_169046932.1 single-stranded DNA-binding protein Machinery gene
  HED66_RS14190 - 3125902..3126660 (+) 759 WP_169046933.1 substrate-binding periplasmic protein -
  HED66_RS21435 - 3126735..3126860 (-) 126 WP_011899188.1 hypothetical protein -
  HED66_RS14195 - 3127325..3128203 (+) 879 WP_059114039.1 cation diffusion facilitator family transporter -
  HED66_RS14200 - 3128376..3128660 (+) 285 WP_011899186.1 DUF3811 domain-containing protein -
  HED66_RS14205 cspA 3129153..3129365 (+) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21515.99 Da        Isoelectric Point: 5.9301

>NTDB_id=441331 HED66_RS14185 WP_169046932.1 3125143..3125733(+) (ssb) [Aeromonas salmonicida strain SRW-OG1]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEVLVDSFSGVMQMLGGRPQGGAGQNMGGQPQAQGNWGQPQQGMPAQQPVNQTRPAAAPQQ
NMQQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=441331 HED66_RS14185 WP_169046932.1 3125143..3125733(+) (ssb) [Aeromonas salmonicida strain SRW-OG1]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTGGGACAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCCGTGACCAATATCACCCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGTGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCTCAGGTCTATGTC
GAAGGGAAACTGCAGACTCGCAAATGGCAGGATCAAGGTGGCCAAGAGCGTTATACCACTGAAGTGCTGGTAGACAGCTT
CAGTGGCGTGATGCAGATGCTGGGTGGTCGCCCGCAAGGTGGCGCTGGCCAAAACATGGGTGGCCAACCTCAAGCTCAAG
GCAACTGGGGTCAACCGCAACAAGGCATGCCAGCCCAGCAGCCGGTAAACCAGACTCGTCCTGCCGCCGCACCGCAGCAG
AACATGCAGCAGCCACAAGGCGGTTATGGTCGTCCGGCCCAGCAGCCCCAATCAGCACCACCTGTCTACAACGAGCCGCC
GATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.172

100

0.679
  ssb Glaesserella parasuis strain SC1401

54.404

98.469

0.536
  ssb Neisseria meningitidis MC58

48.187

98.469

0.474
  ssb Neisseria gonorrhoeae MS11

47.668

98.469

0.469