Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HIN86_RS01650 Genome accession   NZ_CP051875
Coordinates   358454..358936 (+) Length   160 a.a.
NCBI ID   WP_001046424.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353454..363936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS01640 (HIN86_01640) pilX 353757..354575 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN86_RS01645 (HIN86_01645) pilY1 354587..358441 (+) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN86_RS01650 (HIN86_01650) pilY2 358454..358936 (+) 483 WP_001046424.1 type IV pilin protein Machinery gene
  HIN86_RS01655 (HIN86_01655) pilE 358933..359358 (+) 426 WP_031999633.1 type IV pilin protein Machinery gene
  HIN86_RS01660 (HIN86_01660) rpsP 359505..359756 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HIN86_RS01665 (HIN86_01665) rimM 359776..360324 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HIN86_RS01670 (HIN86_01670) trmD 360370..361110 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HIN86_RS01675 (HIN86_01675) rplS 361319..361687 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HIN86_RS01680 (HIN86_01680) - 361740..362681 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  HIN86_RS01685 (HIN86_01685) - 362796..363827 (-) 1032 WP_002007674.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17577.81 Da        Isoelectric Point: 8.4834

>NTDB_id=441267 HIN86_RS01650 WP_001046424.1 358454..358936(+) (pilY2) [Acinetobacter baumannii strain Ab-B004d-c]
MNKYSILRFNQGVTLIELMVVIVIVAIFTSIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=441267 HIN86_RS01650 WP_001046424.1 358454..358936(+) (pilY2) [Acinetobacter baumannii strain Ab-B004d-c]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTACTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGAACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

38.953

100

0.419