Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HIN86_RS01640 Genome accession   NZ_CP051875
Coordinates   353757..354575 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348757..359575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS01605 (HIN86_01605) - 349339..349469 (-) 131 Protein_306 hypothetical protein -
  HIN86_RS01610 (HIN86_01610) rpoZ 349508..349786 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HIN86_RS01615 (HIN86_01615) gmk 349859..350488 (-) 630 WP_000015937.1 guanylate kinase -
  HIN86_RS01620 (HIN86_01620) ispH 350611..351561 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIN86_RS01625 (HIN86_01625) fimU 351731..352204 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIN86_RS01630 (HIN86_01630) pilV 352198..352758 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HIN86_RS01635 (HIN86_01635) pilW 352759..353760 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HIN86_RS01640 (HIN86_01640) pilX 353757..354575 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN86_RS01645 (HIN86_01645) pilY1 354587..358441 (+) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN86_RS01650 (HIN86_01650) pilY2 358454..358936 (+) 483 WP_001046424.1 type IV pilin protein Machinery gene
  HIN86_RS01655 (HIN86_01655) pilE 358933..359358 (+) 426 WP_031999633.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=441265 HIN86_RS01640 WP_000149374.1 353757..354575(+) (pilX) [Acinetobacter baumannii strain Ab-B004d-c]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=441265 HIN86_RS01640 WP_000149374.1 353757..354575(+) (pilX) [Acinetobacter baumannii strain Ab-B004d-c]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993