Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HIN86_RS01655 Genome accession   NZ_CP051875
Coordinates   358933..359358 (+) Length   141 a.a.
NCBI ID   WP_031999633.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353933..364358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS01645 (HIN86_01645) pilY1 354587..358441 (+) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN86_RS01650 (HIN86_01650) pilY2 358454..358936 (+) 483 WP_001046424.1 type IV pilin protein Machinery gene
  HIN86_RS01655 (HIN86_01655) pilE 358933..359358 (+) 426 WP_031999633.1 type IV pilin protein Machinery gene
  HIN86_RS01660 (HIN86_01660) rpsP 359505..359756 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HIN86_RS01665 (HIN86_01665) rimM 359776..360324 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HIN86_RS01670 (HIN86_01670) trmD 360370..361110 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HIN86_RS01675 (HIN86_01675) rplS 361319..361687 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HIN86_RS01680 (HIN86_01680) - 361740..362681 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  HIN86_RS01685 (HIN86_01685) - 362796..363827 (-) 1032 WP_002007674.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15193.39 Da        Isoelectric Point: 7.8144

>NTDB_id=441268 HIN86_RS01655 WP_031999633.1 358933..359358(+) (pilE) [Acinetobacter baumannii strain Ab-B004d-c]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKSATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=441268 HIN86_RS01655 WP_031999633.1 358933..359358(+) (pilE) [Acinetobacter baumannii strain Ab-B004d-c]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACATTAGAATCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAAGTGCCACAGTTTGTGCACTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

90.071

100

0.901
  comF Acinetobacter baylyi ADP1

50

99.291

0.496