Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HIN87_RS05165 Genome accession   NZ_CP051869
Coordinates   1051637..1052218 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain Ab-D10a-a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1020385..1052218 1051637..1052218 within 0


Gene organization within MGE regions


Location: 1020385..1052218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN87_RS05035 (HIN87_05035) - 1020385..1021305 (-) 921 WP_000423156.1 LysR family transcriptional regulator -
  HIN87_RS05040 (HIN87_05040) - 1021444..1022688 (+) 1245 WP_020753520.1 MFS transporter -
  HIN87_RS05050 (HIN87_05050) - 1023530..1023952 (-) 423 WP_031999972.1 GFA family protein -
  HIN87_RS05055 (HIN87_05055) - 1023961..1024788 (-) 828 WP_025470143.1 SAM-dependent methyltransferase -
  HIN87_RS05060 (HIN87_05060) - 1024793..1026091 (-) 1299 WP_000350212.1 NAD(P)/FAD-dependent oxidoreductase -
  HIN87_RS05065 (HIN87_05065) - 1026531..1027403 (-) 873 WP_000713964.1 pirin family protein -
  HIN87_RS05070 (HIN87_05070) ycaC 1027681..1028307 (+) 627 WP_000046156.1 isochorismate family cysteine hydrolase YcaC -
  HIN87_RS05075 (HIN87_05075) - 1028328..1029302 (+) 975 WP_000912185.1 LysR substrate-binding domain-containing protein -
  HIN87_RS05080 (HIN87_05080) - 1029407..1030855 (-) 1449 WP_000615682.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  HIN87_RS05085 (HIN87_05085) gabT 1030852..1032144 (-) 1293 WP_038405385.1 4-aminobutyrate--2-oxoglutarate transaminase -
  HIN87_RS05090 (HIN87_05090) - 1032300..1033799 (+) 1500 WP_001257160.1 PLP-dependent aminotransferase family protein -
  HIN87_RS05095 (HIN87_05095) - 1033860..1035302 (-) 1443 WP_000718865.1 amino acid permease -
  HIN87_RS05100 (HIN87_05100) - 1035608..1036156 (-) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  HIN87_RS05105 (HIN87_05105) - 1036225..1036920 (+) 696 WP_031999976.1 AzlC family ABC transporter permease -
  HIN87_RS05110 (HIN87_05110) - 1036917..1037240 (+) 324 WP_031999977.1 AzlD domain-containing protein -
  HIN87_RS05115 (HIN87_05115) - 1037561..1038112 (+) 552 WP_169030849.1 recombinase family protein -
  HIN87_RS05120 (HIN87_05120) - 1038121..1039320 (-) 1200 WP_169030848.1 reverse transcriptase domain-containing protein -
  HIN87_RS05125 (HIN87_05125) - 1040032..1045023 (-) 4992 WP_169030847.1 DEAD/DEAH box helicase -
  HIN87_RS05130 (HIN87_05130) - 1045280..1045459 (-) 180 WP_161404845.1 hypothetical protein -
  HIN87_RS05135 (HIN87_05135) - 1045526..1045900 (-) 375 WP_017396149.1 antitoxin Xre-like helix-turn-helix domain-containing protein -
  HIN87_RS05140 (HIN87_05140) - 1045875..1046033 (-) 159 WP_169030846.1 hypothetical protein -
  HIN87_RS05145 (HIN87_05145) - 1046172..1046588 (-) 417 WP_107908888.1 hypothetical protein -
  HIN87_RS05150 (HIN87_05150) - 1046590..1048713 (-) 2124 WP_107908886.1 integrase -
  HIN87_RS05155 (HIN87_05155) - 1048706..1050262 (-) 1557 WP_169030845.1 site-specific integrase -
  HIN87_RS05160 (HIN87_05160) - 1050255..1051481 (-) 1227 WP_107908883.1 site-specific integrase -
  HIN87_RS05165 (HIN87_05165) ssb 1051637..1052218 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=441228 HIN87_RS05165 WP_001215080.1 1051637..1052218(-) (ssb) [Acinetobacter baumannii strain Ab-D10a-a]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=441228 HIN87_RS05165 WP_001215080.1 1051637..1052218(-) (ssb) [Acinetobacter baumannii strain Ab-D10a-a]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGCGGTTTC
GGTAATGGTGGCAATAGCCCACAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGACTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394