Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HG549_RS02485 Genome accession   NZ_CP051857
Coordinates   549343..549882 (+) Length   179 a.a.
NCBI ID   WP_170027998.1    Uniprot ID   -
Organism   Pseudomonas sp. SK     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 544343..554882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG549_RS02470 (HG549_02470) bfr 544374..544838 (+) 465 WP_084857331.1 bacterioferritin -
  HG549_RS02475 (HG549_02475) uvrA 544975..547809 (-) 2835 WP_170027996.1 excinuclease ABC subunit UvrA -
  HG549_RS02480 (HG549_02480) - 547939..549333 (+) 1395 WP_170027997.1 MFS transporter -
  HG549_RS02485 (HG549_02485) ssb 549343..549882 (+) 540 WP_170027998.1 single-stranded DNA-binding protein Machinery gene
  HG549_RS02490 (HG549_02490) - 550066..550524 (+) 459 WP_170027999.1 hypothetical protein -
  HG549_RS02495 (HG549_02495) - 550747..552147 (-) 1401 WP_170028000.1 PLP-dependent aminotransferase family protein -
  HG549_RS02500 (HG549_02500) - 552561..553586 (+) 1026 WP_170028001.1 TauD/TfdA family dioxygenase -
  HG549_RS02505 (HG549_02505) - 553618..554403 (+) 786 WP_170028002.1 TSUP family transporter -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19816.93 Da        Isoelectric Point: 5.9286

>NTDB_id=440947 HG549_RS02485 WP_170027998.1 549343..549882(+) (ssb) [Pseudomonas sp. SK]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQAGGNYGGGQQQYNQAPRQQAPRPQQAPQRPAPQ
QPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=440947 HG549_RS02485 WP_170027998.1 549343..549882(+) (ssb) [Pseudomonas sp. SK]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGTGAATGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAGGGCCAGCAGCAGGGCGGTGACCCGTACAATCAAGCTGGCGGCAACTATGGCG
GTGGCCAGCAGCAGTACAACCAGGCCCCACGCCAGCAGGCCCCGCGCCCGCAACAGGCTCCGCAGCGCCCAGCGCCGCAA
CAGCCGGCACCGCAACCGGCAGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.354

100

0.57
  ssb Neisseria meningitidis MC58

49.451

100

0.503
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.503
  ssb Neisseria gonorrhoeae MS11

48.889

100

0.492