Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   C248_RS08410 Genome accession   NC_018608
Coordinates   1722783..1723787 (-) Length   334 a.a.
NCBI ID   WP_001005766.1    Uniprot ID   -
Organism   Staphylococcus aureus 08BA02176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717783..1728787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C248_RS08395 (C248_1681) yajC 1720315..1720575 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  C248_RS08400 (C248_1682) tgt 1720594..1721733 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  C248_RS08405 (C248_1683) queA 1721756..1722781 (-) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C248_RS08410 (C248_1684) ruvB 1722783..1723787 (-) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  C248_RS08415 (C248_1685) ruvA 1723819..1724421 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  C248_RS08420 (C248_1686) - 1724435..1724890 (-) 456 WP_000368902.1 ACT domain-containing protein -
  C248_RS08425 (C248_1687) obgE 1724903..1726195 (-) 1293 WP_000496090.1 GTPase ObgE -
  C248_RS08430 (C248_1688) rpmA 1726682..1726966 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  C248_RS08435 (C248_1689) - 1726978..1727298 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  C248_RS08440 (C248_1690) rplU 1727304..1727612 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  C248_RS08445 (C248_1691) mreD 1728099..1728629 (-) 531 WP_001259929.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37687.98 Da        Isoelectric Point: 5.0865

>NTDB_id=44088 C248_RS08410 WP_001005766.1 1722783..1723787(-) (ruvB) [Staphylococcus aureus 08BA02176]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=44088 C248_RS08410 WP_001005766.1 1722783..1723787(-) (ruvB) [Staphylococcus aureus 08BA02176]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACAGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

65.644

97.605

0.641
  ruvB Streptococcus pneumoniae TIGR4

57.879

98.802

0.572
  ruvB Streptococcus pneumoniae R6

57.576

98.802

0.569
  ruvB Streptococcus pneumoniae D39

57.576

98.802

0.569
  ruvB Helicobacter pylori 26695

56.173

97.006

0.545
  ruvB Synechocystis sp. PCC 6803

54.062

95.808

0.518

Multiple sequence alignment