Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HHJ31_RS22365 Genome accession   NZ_CP051719
Coordinates   4687034..4687663 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain SCU-116     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4682034..4692663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ31_RS22345 (HHJ31_22350) ycbZ 4682434..4684194 (-) 1761 WP_000156501.1 Lon protease family protein -
  HHJ31_RS22350 (HHJ31_22355) matP 4684380..4684832 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HHJ31_RS22355 (HHJ31_22360) ompA 4684910..4685950 (-) 1041 WP_001350588.1 porin OmpA -
  HHJ31_RS22360 (HHJ31_22365) sulA 4686306..4686815 (-) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  HHJ31_RS22365 (HHJ31_22370) sxy/tfoX 4687034..4687663 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HHJ31_RS22370 (HHJ31_22375) yccS 4687626..4689788 (-) 2163 WP_000875041.1 YccS family putative transporter -
  HHJ31_RS22375 (HHJ31_22380) yccF 4689798..4690244 (-) 447 WP_001261236.1 YccF domain-containing protein -
  HHJ31_RS22380 (HHJ31_22385) helD 4690367..4692421 (+) 2055 WP_001350178.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=440672 HHJ31_RS22365 WP_000839136.1 4687034..4687663(+) (sxy/tfoX) [Escherichia coli strain SCU-116]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=440672 HHJ31_RS22365 WP_000839136.1 4687034..4687663(+) (sxy/tfoX) [Escherichia coli strain SCU-116]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99