Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HH212_RS09200 Genome accession   NZ_CP051685
Coordinates   2130248..2130739 (+) Length   163 a.a.
NCBI ID   WP_170202213.1    Uniprot ID   -
Organism   Massilia forsythiae strain GN2-R2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2125248..2135739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH212_RS09195 (HH212_09195) uvrA 2126885..2129734 (-) 2850 WP_170202212.1 excinuclease ABC subunit UvrA -
  HH212_RS09200 (HH212_09200) ssb 2130248..2130739 (+) 492 WP_170202213.1 single-stranded DNA-binding protein Machinery gene
  HH212_RS09205 (HH212_09205) - 2130806..2131165 (-) 360 WP_170202214.1 DUF1428 domain-containing protein -
  HH212_RS09210 (HH212_09210) - 2131738..2132418 (+) 681 WP_170202215.1 energy-coupling factor ABC transporter permease -
  HH212_RS27810 (HH212_09215) - 2132415..2132897 (+) 483 WP_170202216.1 energy-coupling factor ABC transporter substrate-binding protein -
  HH212_RS09220 (HH212_09220) cbiQ 2132887..2133651 (+) 765 WP_170202217.1 cobalt ECF transporter T component CbiQ -
  HH212_RS09225 (HH212_09225) - 2133648..2134742 (+) 1095 WP_229217641.1 energy-coupling factor ABC transporter ATP-binding protein -
  HH212_RS09230 (HH212_09230) cobM 2134739..2135548 (+) 810 WP_170202218.1 precorrin-4 C(11)-methyltransferase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17817.93 Da        Isoelectric Point: 5.9517

>NTDB_id=440459 HH212_RS09200 WP_170202213.1 2130248..2130739(+) (ssb) [Massilia forsythiae strain GN2-R2]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNSGEQKELTEWHRISFFGRMAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVERYSTDIVAENMQMLGGRQGMGGGESYGGDEGYDAPPSRPAPRQAPPAPAARPQPKPAANFSDMDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=440459 HH212_RS09200 WP_170202213.1 2130248..2130739(+) (ssb) [Massilia forsythiae strain GN2-R2]
ATGGCATCAGTCAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGACCCGGAAATCCGTTACATGCCGAGCGGCGACGC
CATCGCCAACATCGCCGTCGCGACCTCGTACAAGTCGAAGGACCGCAATAGCGGCGAGCAGAAAGAGCTGACCGAGTGGC
ACCGCATTTCCTTCTTCGGCCGCATGGCCGAGATCGTCGGCCAGTACCTCAAGAAGGGCTCGTCGGTCTACGTCGAAGGT
CGCCTGCAGACCCGCAAGTACACCGACAAGGACGGCGTCGAGCGTTACTCGACCGACATCGTCGCGGAAAACATGCAGAT
GCTGGGTGGCCGCCAGGGCATGGGCGGCGGCGAGAGCTACGGCGGCGACGAGGGCTACGACGCCCCACCGAGCCGTCCGG
CACCGCGCCAGGCGCCGCCGGCACCGGCCGCACGTCCGCAGCCGAAGCCGGCCGCGAACTTCTCGGATATGGATGACGAT
ATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

54.598

100

0.583
  ssb Neisseria gonorrhoeae MS11

51.977

100

0.564
  ssb Vibrio cholerae strain A1552

51.412

100

0.558
  ssb Glaesserella parasuis strain SC1401

48.087

100

0.54