Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HH213_RS09930 Genome accession   NZ_CP051684
Coordinates   2170278..2170796 (-) Length   172 a.a.
NCBI ID   WP_110845814.1    Uniprot ID   -
Organism   Duganella dendranthematis strain AF9R3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2165278..2175796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH213_RS09905 (HH213_09905) - 2166802..2167473 (-) 672 WP_169112146.1 hypothetical protein -
  HH213_RS09910 (HH213_09910) - 2167466..2168089 (-) 624 WP_169112147.1 RNA polymerase sigma factor -
  HH213_RS09915 (HH213_09915) - 2168277..2169083 (+) 807 WP_169112148.1 hypothetical protein -
  HH213_RS09920 (HH213_09920) - 2169113..2169874 (+) 762 WP_169112149.1 DUF4852 domain-containing protein -
  HH213_RS09925 (HH213_09925) - 2169896..2170201 (+) 306 WP_110845813.1 hypothetical protein -
  HH213_RS09930 (HH213_09930) ssb 2170278..2170796 (-) 519 WP_110845814.1 single-stranded DNA-binding protein Machinery gene
  HH213_RS09935 (HH213_09935) - 2170884..2171237 (-) 354 WP_110845815.1 ferredoxin -
  HH213_RS09940 (HH213_09940) cobJ 2171234..2172211 (-) 978 WP_110845816.1 precorrin-3B C(17)-methyltransferase -
  HH213_RS09945 (HH213_09945) - 2172208..2172615 (-) 408 WP_169112150.1 cobalamin biosynthesis protein -
  HH213_RS09950 (HH213_09950) - 2172612..2173364 (-) 753 WP_174864403.1 cobalamin biosynthesis central domain-containing protein -
  HH213_RS09955 (HH213_09955) cobI 2173361..2174173 (-) 813 WP_169112151.1 precorrin-2 C(20)-methyltransferase -
  HH213_RS09960 (HH213_09960) cbiE 2174166..2175470 (-) 1305 WP_169112152.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18534.77 Da        Isoelectric Point: 5.9467

>NTDB_id=440433 HH213_RS09930 WP_110845814.1 2170278..2170796(-) (ssb) [Duganella dendranthematis strain AF9R3]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAENMQMLGGRAGGGDAGMDDGNSYGGGGGYEAPPQRQAPAPRPQMAAPAPAPRPAPRPA
PNFSDMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=440433 HH213_RS09930 WP_110845814.1 2170278..2170796(-) (ssb) [Duganella dendranthematis strain AF9R3]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGCGATCCTGAAATTCGCTACATGCCTAGCGGTGATGC
GATCGCCAACATCGCCGTGGCGACCTCGTATAAATCGAAAGACCGTAACACCGGTGAGCAGAAAGAGCTGACCGAGTGGC
ACCGTATTTCGTTCTTCGGCCGTCTGGCGGAAATCGTCGGCCAGTACCTGAAAAAAGGTTCGTCGGTCTACGTCGAAGGC
CGTCTGCAGACCCGTAAGTACACCGATAAAGATGGCGTAGAGAAATACGCAACCGACATCATCGCGGAAAACATGCAGAT
GCTGGGTGGCCGCGCAGGTGGCGGCGACGCCGGCATGGACGATGGCAACAGCTACGGCGGTGGCGGTGGCTACGAAGCCC
CACCACAGCGCCAGGCTCCGGCCCCGCGCCCGCAGATGGCGGCCCCGGCGCCAGCACCACGCCCAGCCCCGCGTCCAGCA
CCGAACTTCTCGGACATGGATGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

53.672

100

0.552
  ssb Neisseria meningitidis MC58

51.412

100

0.529
  ssb Vibrio cholerae strain A1552

50.279

100

0.523
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.506