Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HH196_RS09410 Genome accession   NZ_CP051666
Coordinates   1936847..1937365 (-) Length   172 a.a.
NCBI ID   WP_169451868.1    Uniprot ID   A0A858R084
Organism   Marinobacterium sp. LSUCC0821     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1931847..1942365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH196_RS09380 (HH196_09380) pfkA 1932007..1933011 (-) 1005 WP_169451863.1 6-phosphofructokinase -
  HH196_RS09385 (HH196_09385) - 1933151..1934053 (-) 903 WP_169451864.1 dienelactone hydrolase family protein -
  HH196_RS09390 (HH196_09390) - 1934257..1934751 (+) 495 WP_169451865.1 hypothetical protein -
  HH196_RS09395 (HH196_09395) - 1934752..1935516 (+) 765 WP_248276846.1 sulfite exporter TauE/SafE family protein -
  HH196_RS09400 (HH196_09400) - 1935513..1936121 (-) 609 WP_169451866.1 LysE family translocator -
  HH196_RS09405 (HH196_09405) - 1936135..1936764 (-) 630 WP_169451867.1 LysE/ArgO family amino acid transporter -
  HH196_RS09410 (HH196_09410) ssb 1936847..1937365 (-) 519 WP_169451868.1 single-stranded DNA-binding protein Machinery gene
  HH196_RS09415 (HH196_09415) uvrA 1937609..1940428 (+) 2820 WP_169451869.1 excinuclease ABC subunit UvrA -
  HH196_RS09420 (HH196_09420) ilvD 1940499..1942331 (-) 1833 WP_169451870.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19001.91 Da        Isoelectric Point: 4.9464

>NTDB_id=440364 HH196_RS09410 WP_169451868.1 1936847..1937365(-) (ssb) [Marinobacterium sp. LSUCC0821]
MARGINKVILVGNIGGDPETRFMPNGSAVTNITLATSDSWKDKQSGQMQERTEWHRVVFFNRLAEIAGEYLRKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVASEMQMLDGRGGDSNGGGYQQQGGNAGYGQQQGGGAPMQQTPRQQAPQQQAPMQQQQP
PAFDDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=440364 HH196_RS09410 WP_169451868.1 1936847..1937365(-) (ssb) [Marinobacterium sp. LSUCC0821]
ATGGCACGCGGTATAAACAAGGTAATTCTAGTTGGTAACATTGGGGGCGACCCTGAAACGCGCTTTATGCCAAATGGCAG
CGCGGTAACTAACATTACGCTAGCAACAAGTGACTCTTGGAAAGACAAGCAGTCTGGCCAGATGCAAGAGCGTACCGAAT
GGCACCGTGTTGTATTCTTCAATCGTCTTGCTGAGATCGCAGGTGAATACCTACGTAAAGGCTCTAAAGTGTATGTCGAA
GGCTCACTTCGCACACGCAAATGGCAGGGCCAGGATGGCCAGGATCGCTACACGACTGAGATCGTAGCGAGCGAAATGCA
GATGCTAGACGGCCGTGGCGGCGACTCTAACGGTGGCGGTTACCAGCAACAAGGCGGTAACGCTGGTTATGGTCAGCAGC
AGGGTGGCGGTGCTCCAATGCAACAGACACCTCGTCAGCAGGCTCCACAGCAGCAAGCGCCTATGCAACAGCAGCAACCA
CCTGCGTTTGATGACTTCGATGACGACATCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A858R084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.618

100

0.576
  ssb Glaesserella parasuis strain SC1401

52.973

100

0.57
  ssb Neisseria gonorrhoeae MS11

48.619

100

0.512
  ssb Neisseria meningitidis MC58

47.253

100

0.5