Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HG421_RS14115 Genome accession   NZ_CP051651
Coordinates   3351623..3352681 (-) Length   352 a.a.
NCBI ID   WP_169706911.1    Uniprot ID   A0A7Z2VCA7
Organism   Xanthomonas campestris pv. badrii strain NEB122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3346623..3357681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG421_RS14095 (HG421_14095) - 3347683..3349629 (-) 1947 WP_169706908.1 type IV pilus secretin PilQ family protein -
  HG421_RS14100 (HG421_14100) - 3349649..3350182 (-) 534 WP_169706909.1 pilus assembly protein PilP -
  HG421_RS14105 (HG421_14105) - 3350179..3350844 (-) 666 WP_064510515.1 type 4a pilus biogenesis protein PilO -
  HG421_RS14110 (HG421_14110) - 3350841..3351623 (-) 783 WP_169706910.1 PilN domain-containing protein -
  HG421_RS14115 (HG421_14115) comM 3351623..3352681 (-) 1059 WP_169706911.1 pilus assembly protein PilM Machinery gene
  HG421_RS14120 (HG421_14120) - 3352896..3355322 (+) 2427 WP_169706912.1 penicillin-binding protein 1A -
  HG421_RS14125 (HG421_14125) - 3355566..3356225 (+) 660 WP_169706913.1 hypothetical protein -
  HG421_RS14130 (HG421_14130) - 3356412..3357227 (+) 816 WP_169706914.1 DUF4375 domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37588.18 Da        Isoelectric Point: 4.3924

>NTDB_id=440253 HG421_RS14115 WP_169706911.1 3351623..3352681(-) (comM) [Xanthomonas campestris pv. badrii strain NEB122]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPIPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=440253 HG421_RS14115 WP_169706911.1 3351623..3352681(-) (comM) [Xanthomonas campestris pv. badrii strain NEB122]
GTGGGGCTTCTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTTTTGCAGCTGTC
GCGCAGCGGGAATCGTTTTCGCGTGGAACACTACGCGGTGGAACCGTTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGTCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCGGCGGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCTGCCGACCTGGACGATAGCGATCTGGAGGCCCAGGTCGA
ACTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATACCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAACGTGGAGCTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTGGCCAGCGAACTGCCGGT
GGCCGCCGATGCGGTGGTCGCGCTGGTGGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGCCGTAGCC
TGTACAGCCGCGAGCAGGTATTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGTTACGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGTGGGTTGCCGGAAAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCCGGCAGTGAATTCAATCGCGTGGACTGCATCGTGCTGGCCGGCG
GCTGCGCCGCGTTGGCGCGGTTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGACCACCGTGGTGGCCAATCCGCTCGCA
CAGATGACGCTGGGGCCGAAGGTCCAGGCCCACGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2VCA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472