NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	HHJ99_RS08215	Genome accession	NZ_CP051643
Coordinates	1658107..1658616 (-)	Length	169 a.a.
NCBI ID	WP_002445148.1	Uniprot ID	-
Organism	Staphylococcus caprae strain SY333
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1653107..1663616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ99_RS08170 (HHJ99_08150)	-	1653117..1653380 (+)	264	WP_002445166.1	hypothetical protein	-
HHJ99_RS08175 (HHJ99_08155)	-	1653377..1654129 (-)	753	WP_002445163.1	amidohydrolase family protein	-
HHJ99_RS08180 (HHJ99_08160)	-	1654297..1654554 (+)	258	WP_002445161.1	helix-turn-helix transcriptional regulator	-
HHJ99_RS08185 (HHJ99_08165)	-	1654718..1654993 (-)	276	WP_002445159.1	hypothetical protein	-
HHJ99_RS13765	-	1655288..1655488 (-)	201	WP_002445158.1	hypothetical protein	-
HHJ99_RS08195 (HHJ99_08175)	-	1655530..1655955 (+)	426	WP_002445155.1	DUF1433 domain-containing protein	-
HHJ99_RS08200 (HHJ99_08180)	-	1656167..1656772 (+)	606	WP_002445153.1	hypothetical protein	-
HHJ99_RS13770	-	1656875..1657015 (-)	141	Protein_1571	terminase small subunit	-
HHJ99_RS13775	-	1657300..1657674 (-)	375	Protein_1572	terminase small subunit	-
HHJ99_RS08210 (HHJ99_08190)	rpsR	1657817..1658059 (-)	243	WP_001831354.1	30S ribosomal protein S18	-
HHJ99_RS08215 (HHJ99_08195)	ssbA	1658107..1658616 (-)	510	WP_002445148.1	single-stranded DNA-binding protein	Machinery gene
HHJ99_RS08220 (HHJ99_08200)	rpsF	1658638..1658934 (-)	297	WP_002445146.1	30S ribosomal protein S6	-
HHJ99_RS08225 (HHJ99_08205)	-	1659347..1660162 (+)	816	WP_002445144.1	GH25 family lysozyme	-
HHJ99_RS08230 (HHJ99_08210)	-	1660237..1660428 (+)	192	WP_002445142.1	hypothetical protein	-
HHJ99_RS08235 (HHJ99_08215)	ychF	1660854..1661951 (-)	1098	WP_170080875.1	redox-regulated ATPase YchF	-
HHJ99_RS08240 (HHJ99_08220)	-	1661963..1662166 (-)	204	WP_002445134.1	DUF951 domain-containing protein	-
HHJ99_RS08245 (HHJ99_08225)	-	1662187..1663068 (-)	882	WP_002445133.1	mechanosensitive ion channel family protein	-

Sequence

Protein

Download Length: 169 a.a. Molecular weight: 18702.25 Da Isoelectric Point: 4.7305

                                >NTDB_id=440215 HHJ99_RS08215 WP_002445148.1 1658107..1658616(-) (ssbA) [Staphylococcus caprae strain SY333]

MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR

SYENQEGRRIFVTEVVCDSVQFLEPKNSQQGGQRSQNNDFQDYGQGFGGQQSGQNTSYNNNNSSKSNQSDNPFANANGPI

DISDDDLPF

Nucleotide

Download Length: 510 bp

                                >NTDB_id=440215 HHJ99_RS08215 WP_002445148.1 1658107..1658616(-) (ssbA) [Staphylococcus caprae strain SY333]

ATGTTAAATAGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC

GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGATTTCATTAATTGTGTTGTCT

TCAGAAGACAAGCTGAAAATGTTAATAACTACTTATCTAAAGGTAGCTTAGCTGGCGTTGATGGTCGCATACAATCGCGT

AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAGAA

CTCACAACAAGGTGGCCAACGTTCACAAAACAACGATTTCCAAGACTATGGTCAAGGATTCGGTGGTCAACAATCAGGAC

AAAATACGTCATACAATAACAATAATTCATCAAAATCTAATCAATCTGATAATCCATTTGCAAATGCGAATGGTCCAATT

GACATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	62.011	100	0.657
ssb	Latilactobacillus sakei subsp. sakei 23K	54.335	100	0.556
ssbB	Bacillus subtilis subsp. subtilis str. 168	57.143	66.272	0.379
ssb	Glaesserella parasuis strain SC1401	34.463	100	0.361

Detailed information NTG0440215