Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HHJ56_RS02110 Genome accession   NZ_CP051642
Coordinates   400392..400907 (+) Length   171 a.a.
NCBI ID   WP_035687806.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 395392..405907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS02100 (HHJ56_02100) - 396205..397251 (-) 1047 WP_017805687.1 rod shape-determining protein -
  HHJ56_RS02105 (HHJ56_02105) uvrA 397397..400225 (-) 2829 WP_035687804.1 excinuclease ABC subunit UvrA -
  HHJ56_RS02110 (HHJ56_02110) ssb 400392..400907 (+) 516 WP_035687806.1 single-stranded DNA-binding protein Machinery gene
  HHJ56_RS11885 (HHJ56_02115) - 401053..402127 (-) 1075 Protein_411 alpha/beta hydrolase -
  HHJ56_RS02120 (HHJ56_02120) - 402409..404166 (+) 1758 WP_035687809.1 DUF262 domain-containing protein -
  HHJ56_RS02125 (HHJ56_02125) - 404295..404640 (+) 346 Protein_413 LysR family transcriptional regulator -
  HHJ56_RS02130 (HHJ56_02130) - 404683..405795 (-) 1113 WP_035689483.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19105.94 Da        Isoelectric Point: 5.0012

>NTDB_id=440168 HHJ56_RS02110 WP_035687806.1 400392..400907(+) (ssb) [Avibacterium paragallinarum strain ADL-AP01]
MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWMDKNTGERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRADRGQGGYSAQGGYAQQGGNQYAQSTPSNYQAPQQPATPRPSSSPATMV
DDNFDDDQIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=440168 HHJ56_RS02110 WP_035687806.1 400392..400907(+) (ssb) [Avibacterium paragallinarum strain ADL-AP01]
ATGGCTGGAGTAAATAAAGTTATTATTGTTGGAAATTTAGGAAATGATCCGGAAATTCGTACAATGCCAAATGGGGAAGC
CGTTGCGAACATTAGTGTTGCGACCAGTGAAAGCTGGATGGATAAAAATACGGGAGAACGCCGTGAGATTACCGAATGGC
ATCGTATTGTGTTTTATCGTCGCCAAGCAGAAGTCGCTGGCGAATATTTACGCAAAGGCTCAAAAGTTTATGTTGAAGGG
CGTTTAAGAACTCGCAAATGGCAAGATCAAAATGGCCAAGATCGTTATACAACAGAAATTCAAGGCGATGTTTTGCAAAT
GTTAGATAGCCGTGCAGATAGAGGACAAGGTGGGTATTCAGCTCAAGGGGGATATGCTCAACAAGGCGGCAACCAATATG
CACAATCTACACCATCAAATTATCAAGCACCTCAGCAGCCTGCTACACCTCGCCCTTCATCATCACCCGCTACTATGGTT
GATGATAATTTTGATGATGATCAGATTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.848

100

0.719
  ssb Vibrio cholerae strain A1552

56.906

100

0.602
  ssb Neisseria meningitidis MC58

46.893

100

0.485
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.474