Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HHJ56_RS01290 | Genome accession | NZ_CP051642 |
| Coordinates | 259674..260153 (-) | Length | 159 a.a. |
| NCBI ID | WP_035689249.1 | Uniprot ID | - |
| Organism | Avibacterium paragallinarum strain ADL-AP01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 244535..292406 | 259674..260153 | within | 0 |
Gene organization within MGE regions
Location: 244535..292406
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ56_RS01170 (HHJ56_01170) | cgtA | 244535..245707 (-) | 1173 | WP_035688649.1 | Obg family GTPase CgtA | - |
| HHJ56_RS01175 (HHJ56_01175) | - | 245716..246636 (-) | 921 | WP_035688648.1 | DMT family transporter | - |
| HHJ56_RS01180 (HHJ56_01180) | rpmA | 246801..247058 (-) | 258 | WP_017805010.1 | 50S ribosomal protein L27 | - |
| HHJ56_RS01185 (HHJ56_01185) | rplU | 247079..247390 (-) | 312 | WP_035688647.1 | 50S ribosomal protein L21 | - |
| HHJ56_RS01190 (HHJ56_01190) | ispB | 247628..248599 (+) | 972 | WP_035688646.1 | octaprenyl diphosphate synthase | - |
| HHJ56_RS01195 (HHJ56_01195) | - | 248624..249367 (+) | 744 | WP_035688645.1 | epoxyqueuosine reductase QueH | - |
| HHJ56_RS01200 (HHJ56_01200) | trxA | 249740..250063 (-) | 324 | WP_035688643.1 | thioredoxin | - |
| HHJ56_RS01205 (HHJ56_01205) | - | 250181..251176 (-) | 996 | WP_035688641.1 | 2-hydroxyacid dehydrogenase | - |
| HHJ56_RS01210 (HHJ56_01210) | - | 251194..252303 (-) | 1110 | WP_035688666.1 | methionine biosynthesis PLP-dependent protein | - |
| HHJ56_RS01230 (HHJ56_01230) | - | 252937..254028 (-) | 1092 | WP_168939904.1 | site-specific integrase | - |
| HHJ56_RS01235 (HHJ56_01235) | - | 254265..254861 (-) | 597 | WP_052716802.1 | N-6 DNA methylase | - |
| HHJ56_RS11745 | - | 255102..255890 (-) | 789 | WP_244300904.1 | antA/AntB antirepressor family protein | - |
| HHJ56_RS01245 (HHJ56_01245) | - | 255999..256499 (-) | 501 | WP_046097482.1 | hypothetical protein | - |
| HHJ56_RS01250 (HHJ56_01250) | - | 256564..256782 (-) | 219 | WP_046097481.1 | hypothetical protein | - |
| HHJ56_RS01255 (HHJ56_01255) | - | 256799..257038 (-) | 240 | WP_046097480.1 | hypothetical protein | - |
| HHJ56_RS01260 (HHJ56_01260) | - | 257050..257355 (-) | 306 | WP_046097479.1 | hypothetical protein | - |
| HHJ56_RS01265 (HHJ56_01265) | - | 257357..257701 (-) | 345 | WP_017807489.1 | hypothetical protein | - |
| HHJ56_RS01270 (HHJ56_01270) | - | 257716..257925 (-) | 210 | WP_168939905.1 | hypothetical protein | - |
| HHJ56_RS01275 (HHJ56_01275) | rdgC | 257922..258818 (-) | 897 | WP_035689252.1 | recombination-associated protein RdgC | - |
| HHJ56_RS01280 (HHJ56_01280) | - | 258878..259273 (-) | 396 | WP_051128140.1 | hypothetical protein | - |
| HHJ56_RS01285 (HHJ56_01285) | - | 259270..259587 (-) | 318 | WP_051128139.1 | hypothetical protein | - |
| HHJ56_RS01290 (HHJ56_01290) | ssb | 259674..260153 (-) | 480 | WP_035689249.1 | single-stranded DNA-binding protein | Machinery gene |
| HHJ56_RS01295 (HHJ56_01295) | - | 260141..260773 (-) | 633 | WP_046097549.1 | YqaJ viral recombinase family protein | - |
| HHJ56_RS01300 (HHJ56_01300) | bet | 260770..261549 (-) | 780 | WP_035689246.1 | phage recombination protein Bet | - |
| HHJ56_RS01305 (HHJ56_01305) | - | 261560..262786 (-) | 1227 | WP_233570690.1 | hypothetical protein | - |
| HHJ56_RS01315 (HHJ56_01315) | - | 262716..263390 (-) | 675 | WP_051128138.1 | hypothetical protein | - |
| HHJ56_RS01320 (HHJ56_01320) | - | 263380..263655 (-) | 276 | WP_035689243.1 | hypothetical protein | - |
| HHJ56_RS01325 (HHJ56_01325) | - | 263677..263985 (-) | 309 | WP_046097548.1 | hypothetical protein | - |
| HHJ56_RS01330 (HHJ56_01330) | - | 264079..264651 (-) | 573 | WP_168952571.1 | hypothetical protein | - |
| HHJ56_RS01335 (HHJ56_01335) | - | 265324..265545 (-) | 222 | WP_017806446.1 | hypothetical protein | - |
| HHJ56_RS01340 (HHJ56_01340) | - | 265560..265730 (+) | 171 | WP_017807323.1 | DUF1508 domain-containing protein | - |
| HHJ56_RS01345 (HHJ56_01345) | - | 266049..266345 (+) | 297 | WP_136711940.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HHJ56_RS01350 (HHJ56_01350) | - | 266346..266636 (+) | 291 | WP_017807324.1 | addiction module antidote protein | - |
| HHJ56_RS01355 (HHJ56_01355) | - | 266783..267556 (-) | 774 | WP_017807325.1 | DUF1828 domain-containing protein | - |
| HHJ56_RS01360 (HHJ56_01360) | - | 267558..268043 (-) | 486 | WP_017807326.1 | hypothetical protein | - |
| HHJ56_RS01365 (HHJ56_01365) | - | 268043..268696 (-) | 654 | WP_017807327.1 | LexA family transcriptional regulator | - |
| HHJ56_RS01370 (HHJ56_01370) | - | 268834..269040 (+) | 207 | WP_017807328.1 | helix-turn-helix transcriptional regulator | - |
| HHJ56_RS01375 (HHJ56_01375) | - | 269088..269528 (+) | 441 | Protein_267 | YmfL family putative regulatory protein | - |
| HHJ56_RS01380 (HHJ56_01380) | - | 269546..269953 (-) | 408 | WP_168939907.1 | hypothetical protein | - |
| HHJ56_RS01385 (HHJ56_01385) | - | 270063..270833 (+) | 771 | WP_046097539.1 | phage regulatory protein/antirepressor Ant | - |
| HHJ56_RS01390 (HHJ56_01390) | - | 270830..271636 (+) | 807 | WP_035689420.1 | helix-turn-helix domain-containing protein | - |
| HHJ56_RS01395 (HHJ56_01395) | - | 271633..272316 (+) | 684 | WP_017807330.1 | replication protein P | - |
| HHJ56_RS01400 (HHJ56_01400) | - | 272425..273060 (+) | 636 | WP_052716788.1 | DUF1367 family protein | - |
| HHJ56_RS01405 (HHJ56_01405) | - | 273061..273345 (+) | 285 | WP_035689367.1 | DUF1364 domain-containing protein | - |
| HHJ56_RS11695 | - | 273342..273674 (+) | 333 | WP_051128145.1 | HNH endonuclease | - |
| HHJ56_RS01415 (HHJ56_01415) | - | 273671..274021 (+) | 351 | WP_035689370.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HHJ56_RS01420 (HHJ56_01420) | - | 274021..274383 (+) | 363 | WP_035689371.1 | antiterminator Q family protein | - |
| HHJ56_RS01425 (HHJ56_01425) | - | 274628..275632 (+) | 1005 | WP_035689374.1 | hypothetical protein | - |
| HHJ56_RS01430 (HHJ56_01430) | - | 275930..276100 (-) | 171 | WP_017807323.1 | DUF1508 domain-containing protein | - |
| HHJ56_RS01435 (HHJ56_01435) | - | 276115..276336 (+) | 222 | WP_017806446.1 | hypothetical protein | - |
| HHJ56_RS01440 (HHJ56_01440) | - | 276593..276910 (+) | 318 | WP_035660437.1 | hypothetical protein | - |
| HHJ56_RS01445 (HHJ56_01445) | - | 276914..277171 (+) | 258 | WP_017807508.1 | hypothetical protein | - |
| HHJ56_RS01450 (HHJ56_01450) | - | 277152..277859 (+) | 708 | WP_051128146.1 | HNH endonuclease signature motif containing protein | - |
| HHJ56_RS01460 (HHJ56_01460) | - | 278092..279057 (+) | 966 | WP_046097210.1 | site-specific integrase | - |
| HHJ56_RS01465 (HHJ56_01465) | - | 279057..279719 (+) | 663 | WP_035688039.1 | N-6 DNA methylase | - |
| HHJ56_RS01470 (HHJ56_01470) | - | 279869..280102 (+) | 234 | WP_035688041.1 | hypothetical protein | - |
| HHJ56_RS01475 (HHJ56_01475) | - | 280250..281227 (-) | 978 | WP_035688045.1 | P63C domain-containing protein | - |
| HHJ56_RS01480 (HHJ56_01480) | - | 281394..282191 (+) | 798 | WP_035688046.1 | hypothetical protein | - |
| HHJ56_RS01485 (HHJ56_01485) | - | 282293..282553 (+) | 261 | WP_021723952.1 | hypothetical protein | - |
| HHJ56_RS11750 | - | 282803..283426 (+) | 624 | WP_046097212.1 | BRO family protein | - |
| HHJ56_RS01495 (HHJ56_01495) | - | 283519..283857 (+) | 339 | WP_035688048.1 | hypothetical protein | - |
| HHJ56_RS01500 (HHJ56_01500) | - | 284076..284342 (+) | 267 | WP_046097213.1 | hypothetical protein | - |
| HHJ56_RS01505 (HHJ56_01505) | - | 284332..285279 (+) | 948 | WP_035688050.1 | hypothetical protein | - |
| HHJ56_RS01510 (HHJ56_01510) | - | 285289..285564 (+) | 276 | WP_046097214.1 | hypothetical protein | - |
| HHJ56_RS01515 (HHJ56_01515) | - | 285554..285709 (+) | 156 | WP_156127741.1 | hypothetical protein | - |
| HHJ56_RS01520 (HHJ56_01520) | - | 285706..285930 (+) | 225 | WP_035688051.1 | hypothetical protein | - |
| HHJ56_RS01525 (HHJ56_01525) | - | 285927..286427 (+) | 501 | WP_035688053.1 | siphovirus Gp157 family protein | - |
| HHJ56_RS01530 (HHJ56_01530) | - | 286438..287325 (+) | 888 | WP_035688055.1 | ATP-binding protein | - |
| HHJ56_RS01535 (HHJ56_01535) | ssb | 287325..287804 (+) | 480 | WP_035688057.1 | single-stranded DNA-binding protein | Machinery gene |
| HHJ56_RS01540 (HHJ56_01540) | - | 287813..288061 (+) | 249 | WP_035688059.1 | hypothetical protein | - |
| HHJ56_RS01545 (HHJ56_01545) | - | 288104..288418 (+) | 315 | WP_035688062.1 | hypothetical protein | - |
| HHJ56_RS01550 (HHJ56_01550) | - | 288441..288623 (-) | 183 | WP_035688065.1 | ribbon-helix-helix protein, CopG family | - |
| HHJ56_RS01555 (HHJ56_01555) | - | 288933..289142 (-) | 210 | WP_035688068.1 | hypothetical protein | - |
| HHJ56_RS01560 (HHJ56_01560) | - | 289657..290319 (+) | 663 | WP_035688071.1 | P22AR C-terminal domain-containing protein | - |
| HHJ56_RS01565 (HHJ56_01565) | - | 290563..291159 (+) | 597 | WP_051128099.1 | N-6 DNA methylase | - |
| HHJ56_RS11755 | - | 291190..291513 (+) | 324 | WP_081637542.1 | helix-turn-helix domain-containing protein | - |
| HHJ56_RS01570 (HHJ56_01570) | - | 291426..292406 (+) | 981 | WP_233570723.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17869.72 Da Isoelectric Point: 5.9430
>NTDB_id=440164 HHJ56_RS01290 WP_035689249.1 259674..260153(-) (ssb) [Avibacterium paragallinarum strain ADL-AP01]
MAGINKAIIVGNLGNDPEIRTMQNGDQVATISVATSESWTDKQTGERRELTEWHRIVLYRRLAEIAGQYLKKGSKVYVEG
RIRTRKWQDQQGIERYTTEIQGDVLQMLDSRQDGQGAQTNAPPRQTQSTKSNAYANAKNGNYTPPAQNNGDELDDDIPF
MAGINKAIIVGNLGNDPEIRTMQNGDQVATISVATSESWTDKQTGERRELTEWHRIVLYRRLAEIAGQYLKKGSKVYVEG
RIRTRKWQDQQGIERYTTEIQGDVLQMLDSRQDGQGAQTNAPPRQTQSTKSNAYANAKNGNYTPPAQNNGDELDDDIPF
Nucleotide
Download Length: 480 bp
>NTDB_id=440164 HHJ56_RS01290 WP_035689249.1 259674..260153(-) (ssb) [Avibacterium paragallinarum strain ADL-AP01]
ATGGCAGGCATAAACAAAGCCATCATCGTCGGCAATTTAGGCAACGATCCAGAAATCCGCACAATGCAAAATGGCGATCA
GGTTGCAACAATCAGCGTGGCGACATCAGAAAGCTGGACGGATAAACAAACAGGCGAACGGCGAGAACTCACCGAATGGC
ACAGAATTGTACTTTATCGGCGGTTAGCGGAAATTGCAGGGCAATACCTCAAAAAAGGCTCAAAAGTTTATGTGGAAGGT
CGTATCAGAACCAGAAAATGGCAAGATCAACAAGGCATTGAGCGTTACACCACCGAAATTCAAGGCGATGTATTGCAAAT
GCTAGACAGTCGCCAAGATGGACAAGGTGCGCAAACAAACGCACCACCACGTCAAACGCAATCAACAAAATCCAATGCTT
ATGCCAACGCTAAAAACGGCAACTACACGCCACCAGCGCAGAATAATGGTGATGAGCTAGATGATGATATTCCGTTCTAA
ATGGCAGGCATAAACAAAGCCATCATCGTCGGCAATTTAGGCAACGATCCAGAAATCCGCACAATGCAAAATGGCGATCA
GGTTGCAACAATCAGCGTGGCGACATCAGAAAGCTGGACGGATAAACAAACAGGCGAACGGCGAGAACTCACCGAATGGC
ACAGAATTGTACTTTATCGGCGGTTAGCGGAAATTGCAGGGCAATACCTCAAAAAAGGCTCAAAAGTTTATGTGGAAGGT
CGTATCAGAACCAGAAAATGGCAAGATCAACAAGGCATTGAGCGTTACACCACCGAAATTCAAGGCGATGTATTGCAAAT
GCTAGACAGTCGCCAAGATGGACAAGGTGCGCAAACAAACGCACCACCACGTCAAACGCAATCAACAAAATCCAATGCTT
ATGCCAACGCTAAAAACGGCAACTACACGCCACCAGCGCAGAATAATGGTGATGAGCTAGATGATGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.717 |
| ssb | Vibrio cholerae strain A1552 |
46.328 |
100 |
0.516 |
| ssb | Neisseria meningitidis MC58 |
44.509 |
100 |
0.484 |
| ssb | Neisseria gonorrhoeae MS11 |
42.775 |
100 |
0.465 |