Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HHJ58_RS06720 | Genome accession | NZ_CP051640 |
| Coordinates | 1455524..1456003 (-) | Length | 159 a.a. |
| NCBI ID | WP_035688057.1 | Uniprot ID | - |
| Organism | Avibacterium paragallinarum strain ADL-AP07 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1450922..1498939 | 1455524..1456003 | within | 0 |
Gene organization within MGE regions
Location: 1450922..1498939
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HHJ58_RS06685 (HHJ58_06685) | - | 1450922..1451929 (-) | 1008 | WP_244300938.1 | site-specific integrase | - |
| HHJ58_RS11775 | - | 1451815..1452138 (-) | 324 | WP_081637542.1 | helix-turn-helix domain-containing protein | - |
| HHJ58_RS06690 (HHJ58_06690) | - | 1452169..1452765 (-) | 597 | WP_051128099.1 | N-6 DNA methylase | - |
| HHJ58_RS06695 (HHJ58_06695) | - | 1453009..1453671 (-) | 663 | WP_035688071.1 | P22AR C-terminal domain-containing protein | - |
| HHJ58_RS06700 (HHJ58_06700) | - | 1454186..1454395 (+) | 210 | WP_035688068.1 | hypothetical protein | - |
| HHJ58_RS06705 (HHJ58_06705) | - | 1454705..1454887 (+) | 183 | WP_035688065.1 | ribbon-helix-helix protein, CopG family | - |
| HHJ58_RS06710 (HHJ58_06710) | - | 1454910..1455224 (-) | 315 | WP_035688062.1 | hypothetical protein | - |
| HHJ58_RS06715 (HHJ58_06715) | - | 1455267..1455515 (-) | 249 | WP_035688059.1 | hypothetical protein | - |
| HHJ58_RS06720 (HHJ58_06720) | ssb | 1455524..1456003 (-) | 480 | WP_035688057.1 | single-stranded DNA-binding protein | Machinery gene |
| HHJ58_RS06725 (HHJ58_06725) | - | 1456003..1456890 (-) | 888 | WP_035688055.1 | ATP-binding protein | - |
| HHJ58_RS06730 (HHJ58_06730) | - | 1456901..1457401 (-) | 501 | WP_035688053.1 | siphovirus Gp157 family protein | - |
| HHJ58_RS06735 (HHJ58_06735) | - | 1457398..1457622 (-) | 225 | WP_035688051.1 | hypothetical protein | - |
| HHJ58_RS06740 (HHJ58_06740) | - | 1457619..1457774 (-) | 156 | WP_156127741.1 | hypothetical protein | - |
| HHJ58_RS06745 (HHJ58_06745) | - | 1457764..1458039 (-) | 276 | WP_046097214.1 | hypothetical protein | - |
| HHJ58_RS06750 (HHJ58_06750) | - | 1458049..1458996 (-) | 948 | WP_035688050.1 | hypothetical protein | - |
| HHJ58_RS06755 (HHJ58_06755) | - | 1458986..1459252 (-) | 267 | WP_046097213.1 | hypothetical protein | - |
| HHJ58_RS06760 (HHJ58_06760) | - | 1459471..1459809 (-) | 339 | WP_035688048.1 | hypothetical protein | - |
| HHJ58_RS11780 | - | 1459902..1460525 (-) | 624 | WP_046097212.1 | BRO family protein | - |
| HHJ58_RS06770 (HHJ58_06770) | - | 1460775..1461035 (-) | 261 | WP_021723952.1 | hypothetical protein | - |
| HHJ58_RS06775 (HHJ58_06775) | - | 1461137..1461934 (-) | 798 | WP_035688046.1 | hypothetical protein | - |
| HHJ58_RS06780 (HHJ58_06780) | - | 1462101..1463078 (+) | 978 | WP_035688045.1 | P63C domain-containing protein | - |
| HHJ58_RS06785 (HHJ58_06785) | - | 1463226..1463459 (-) | 234 | WP_035688041.1 | hypothetical protein | - |
| HHJ58_RS06790 (HHJ58_06790) | - | 1463609..1464271 (-) | 663 | WP_035688039.1 | N-6 DNA methylase | - |
| HHJ58_RS06795 (HHJ58_06795) | - | 1464271..1465236 (-) | 966 | WP_046097210.1 | site-specific integrase | - |
| HHJ58_RS06805 (HHJ58_06805) | - | 1465469..1466176 (-) | 708 | WP_051128146.1 | HNH endonuclease signature motif containing protein | - |
| HHJ58_RS06810 (HHJ58_06810) | - | 1466157..1466414 (-) | 258 | WP_017807508.1 | hypothetical protein | - |
| HHJ58_RS06815 (HHJ58_06815) | - | 1466418..1466735 (-) | 318 | WP_035660437.1 | hypothetical protein | - |
| HHJ58_RS06820 (HHJ58_06820) | - | 1466992..1467213 (-) | 222 | WP_017806446.1 | hypothetical protein | - |
| HHJ58_RS06825 (HHJ58_06825) | - | 1467228..1467398 (+) | 171 | WP_017807323.1 | DUF1508 domain-containing protein | - |
| HHJ58_RS06830 (HHJ58_06830) | - | 1467697..1468701 (-) | 1005 | WP_035689374.1 | hypothetical protein | - |
| HHJ58_RS06835 (HHJ58_06835) | - | 1468946..1469308 (-) | 363 | WP_035689371.1 | antiterminator Q family protein | - |
| HHJ58_RS06840 (HHJ58_06840) | - | 1469308..1469658 (-) | 351 | WP_035689370.1 | RusA family crossover junction endodeoxyribonuclease | - |
| HHJ58_RS11705 | - | 1469655..1469987 (-) | 333 | WP_051128145.1 | HNH endonuclease | - |
| HHJ58_RS06850 (HHJ58_06850) | - | 1469984..1470268 (-) | 285 | WP_035689367.1 | DUF1364 domain-containing protein | - |
| HHJ58_RS06855 (HHJ58_06855) | - | 1470269..1470904 (-) | 636 | WP_052716788.1 | DUF1367 family protein | - |
| HHJ58_RS06860 (HHJ58_06860) | - | 1471013..1471696 (-) | 684 | WP_017807330.1 | replication protein P | - |
| HHJ58_RS06865 (HHJ58_06865) | - | 1471693..1472499 (-) | 807 | WP_035689420.1 | helix-turn-helix domain-containing protein | - |
| HHJ58_RS06870 (HHJ58_06870) | - | 1472496..1473266 (-) | 771 | WP_046097539.1 | phage regulatory protein/antirepressor Ant | - |
| HHJ58_RS06875 (HHJ58_06875) | - | 1473376..1473783 (+) | 408 | WP_168939907.1 | hypothetical protein | - |
| HHJ58_RS06880 (HHJ58_06880) | - | 1473801..1474241 (-) | 441 | Protein_1336 | YmfL family putative regulatory protein | - |
| HHJ58_RS06885 (HHJ58_06885) | - | 1474289..1474495 (-) | 207 | WP_017807328.1 | helix-turn-helix transcriptional regulator | - |
| HHJ58_RS06890 (HHJ58_06890) | - | 1474633..1475286 (+) | 654 | WP_017807327.1 | LexA family transcriptional regulator | - |
| HHJ58_RS06895 (HHJ58_06895) | - | 1475286..1475771 (+) | 486 | WP_017807326.1 | hypothetical protein | - |
| HHJ58_RS06900 (HHJ58_06900) | - | 1475773..1476546 (+) | 774 | WP_017807325.1 | DUF1828 domain-containing protein | - |
| HHJ58_RS06905 (HHJ58_06905) | - | 1476693..1476983 (-) | 291 | WP_017807324.1 | addiction module antidote protein | - |
| HHJ58_RS06910 (HHJ58_06910) | - | 1476984..1477280 (-) | 297 | WP_136711940.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| HHJ58_RS06915 (HHJ58_06915) | - | 1477599..1477769 (-) | 171 | WP_017807323.1 | DUF1508 domain-containing protein | - |
| HHJ58_RS06920 (HHJ58_06920) | - | 1477784..1478005 (+) | 222 | WP_017806446.1 | hypothetical protein | - |
| HHJ58_RS06925 (HHJ58_06925) | - | 1478705..1479319 (+) | 615 | WP_168939992.1 | polymer-forming cytoskeletal protein | - |
| HHJ58_RS06930 (HHJ58_06930) | - | 1479413..1479721 (+) | 309 | WP_046097548.1 | hypothetical protein | - |
| HHJ58_RS06935 (HHJ58_06935) | - | 1479743..1480018 (+) | 276 | WP_035689243.1 | hypothetical protein | - |
| HHJ58_RS06940 (HHJ58_06940) | - | 1480008..1480469 (+) | 462 | WP_168939987.1 | hypothetical protein | - |
| HHJ58_RS06945 (HHJ58_06945) | - | 1480466..1480681 (+) | 216 | WP_168939988.1 | hypothetical protein | - |
| HHJ58_RS06955 (HHJ58_06955) | - | 1480611..1481837 (+) | 1227 | WP_233570690.1 | hypothetical protein | - |
| HHJ58_RS06960 (HHJ58_06960) | bet | 1481848..1482626 (+) | 779 | Protein_1351 | phage recombination protein Bet | - |
| HHJ58_RS06965 (HHJ58_06965) | - | 1482623..1483256 (+) | 634 | Protein_1352 | YqaJ viral recombinase family protein | - |
| HHJ58_RS06970 (HHJ58_06970) | ssb | 1483244..1483723 (+) | 480 | WP_035689249.1 | single-stranded DNA-binding protein | Machinery gene |
| HHJ58_RS06975 (HHJ58_06975) | - | 1483887..1484126 (+) | 240 | WP_168939989.1 | hypothetical protein | - |
| HHJ58_RS06980 (HHJ58_06980) | - | 1484123..1484518 (+) | 396 | WP_051128140.1 | hypothetical protein | - |
| HHJ58_RS06985 (HHJ58_06985) | rdgC | 1484578..1485472 (+) | 895 | Protein_1356 | recombination-associated protein RdgC | - |
| HHJ58_RS06990 (HHJ58_06990) | - | 1485469..1485678 (+) | 210 | WP_035689255.1 | hypothetical protein | - |
| HHJ58_RS06995 (HHJ58_06995) | - | 1485694..1485891 (+) | 198 | WP_017807560.1 | hypothetical protein | - |
| HHJ58_RS07000 (HHJ58_07000) | - | 1485894..1486223 (+) | 330 | WP_035689257.1 | hypothetical protein | - |
| HHJ58_RS07005 (HHJ58_07005) | - | 1486339..1486842 (+) | 504 | WP_051128141.1 | hypothetical protein | - |
| HHJ58_RS07010 (HHJ58_07010) | - | 1486835..1487068 (+) | 234 | WP_035689260.1 | hypothetical protein | - |
| HHJ58_RS07015 (HHJ58_07015) | - | 1487144..1487428 (+) | 285 | WP_035689262.1 | hypothetical protein | - |
| HHJ58_RS07020 (HHJ58_07020) | - | 1487495..1487977 (+) | 483 | WP_035689265.1 | methyltransferase | - |
| HHJ58_RS07025 (HHJ58_07025) | - | 1487994..1488590 (+) | 597 | WP_052716794.1 | N-6 DNA methylase | - |
| HHJ58_RS07030 (HHJ58_07030) | - | 1488610..1489998 (+) | 1389 | WP_035689148.1 | DNA cytosine methyltransferase | - |
| HHJ58_RS07035 (HHJ58_07035) | - | 1490032..1490895 (+) | 864 | WP_035689146.1 | SPFH domain-containing protein | - |
| HHJ58_RS07040 (HHJ58_07040) | - | 1490895..1491050 (+) | 156 | WP_156127763.1 | hypothetical protein | - |
| HHJ58_RS07045 (HHJ58_07045) | - | 1491193..1491372 (+) | 180 | WP_017806764.1 | AlpA family transcriptional regulator | - |
| HHJ58_RS07050 (HHJ58_07050) | - | 1491568..1492275 (-) | 708 | WP_035689144.1 | YwiC-like family protein | - |
| HHJ58_RS07055 (HHJ58_07055) | - | 1492468..1492818 (+) | 351 | WP_035689137.1 | RidA family protein | - |
| HHJ58_RS07060 (HHJ58_07060) | - | 1492855..1493718 (-) | 864 | WP_035689134.1 | endonuclease/exonuclease/phosphatase family protein | - |
| HHJ58_RS07065 (HHJ58_07065) | - | 1493873..1495189 (+) | 1317 | WP_017806769.1 | sodium:proton antiporter | - |
| HHJ58_RS07070 (HHJ58_07070) | - | 1495378..1496805 (-) | 1428 | WP_168939941.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17826.62 Da Isoelectric Point: 6.4810
>NTDB_id=440117 HHJ58_RS06720 WP_035688057.1 1455524..1456003(-) (ssb) [Avibacterium paragallinarum strain ADL-AP07]
MAGINKAIIVGNLGNDPEIRTMQNGDQVATISVATSESWTDKQTGERRELTEWHRIVFYRRQAEIAGQYLHKGSKVYVEG
RIRTRKWQDQQGIERYTTEIQGDVLQMLDSRQDGQGAQTNAPPRQTQSTKSNAYANAKNGNYTPPVQGGNDGLDDDIPF
MAGINKAIIVGNLGNDPEIRTMQNGDQVATISVATSESWTDKQTGERRELTEWHRIVFYRRQAEIAGQYLHKGSKVYVEG
RIRTRKWQDQQGIERYTTEIQGDVLQMLDSRQDGQGAQTNAPPRQTQSTKSNAYANAKNGNYTPPVQGGNDGLDDDIPF
Nucleotide
Download Length: 480 bp
>NTDB_id=440117 HHJ58_RS06720 WP_035688057.1 1455524..1456003(-) (ssb) [Avibacterium paragallinarum strain ADL-AP07]
ATGGCAGGCATAAACAAAGCCATCATCGTCGGCAATTTAGGCAACGATCCAGAAATCCGCACAATGCAAAATGGCGATCA
GGTTGCAACAATCAGCGTGGCAACCTCAGAAAGCTGGACTGATAAGCAAACAGGCGAACGGCGAGAACTCACTGAATGGC
ATCGCATTGTTTTTTACCGCAGACAAGCAGAAATTGCAGGGCAATACTTGCATAAAGGCTCAAAAGTGTATGTTGAAGGA
CGTATCAGAACCAGAAAATGGCAAGATCAACAAGGCATTGAGCGTTACACCACTGAAATTCAAGGCGATGTATTGCAAAT
GCTAGACAGTCGCCAAGATGGACAAGGTGCGCAAACAAACGCACCACCACGTCAAACGCAATCGACAAAATCCAATGCTT
ATGCTAACGCCAAAAACGGTAACTACACACCACCAGTGCAGGGTGGTAATGATGGATTAGATGATGATATTCCATTTTAG
ATGGCAGGCATAAACAAAGCCATCATCGTCGGCAATTTAGGCAACGATCCAGAAATCCGCACAATGCAAAATGGCGATCA
GGTTGCAACAATCAGCGTGGCAACCTCAGAAAGCTGGACTGATAAGCAAACAGGCGAACGGCGAGAACTCACTGAATGGC
ATCGCATTGTTTTTTACCGCAGACAAGCAGAAATTGCAGGGCAATACTTGCATAAAGGCTCAAAAGTGTATGTTGAAGGA
CGTATCAGAACCAGAAAATGGCAAGATCAACAAGGCATTGAGCGTTACACCACTGAAATTCAAGGCGATGTATTGCAAAT
GCTAGACAGTCGCCAAGATGGACAAGGTGCGCAAACAAACGCACCACCACGTCAAACGCAATCGACAAAATCCAATGCTT
ATGCTAACGCCAAAAACGGTAACTACACACCACCAGTGCAGGGTGGTAATGATGGATTAGATGATGATATTCCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.889 |
100 |
0.723 |
| ssb | Vibrio cholerae strain A1552 |
45.506 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
42.775 |
100 |
0.465 |
| ssb | Neisseria gonorrhoeae MS11 |
41.04 |
100 |
0.447 |