Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HG718_RS06610 Genome accession   NZ_CP051630
Coordinates   1385350..1385847 (+) Length   165 a.a.
NCBI ID   WP_160587855.1    Uniprot ID   A0A845QBZ7
Organism   Pyruvatibacter mobilis strain CGMCC 1.15125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1380350..1390847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG718_RS06600 (HG718_06600) - 1381192..1381908 (+) 717 WP_160587851.1 DJ-1/PfpI family protein -
  HG718_RS06605 (HG718_06605) uvrA 1381940..1385059 (-) 3120 WP_160587853.1 excinuclease ABC subunit UvrA -
  HG718_RS06610 (HG718_06610) ssb 1385350..1385847 (+) 498 WP_160587855.1 single-stranded DNA-binding protein Machinery gene
  HG718_RS06615 (HG718_06615) - 1385844..1386227 (-) 384 WP_160587857.1 hypothetical protein -
  HG718_RS06620 (HG718_06620) - 1386404..1387270 (+) 867 WP_160587858.1 protein phosphatase 2C domain-containing protein -
  HG718_RS06625 (HG718_06625) gyrA 1387703..1390438 (+) 2736 WP_280521620.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17507.25 Da        Isoelectric Point: 5.2882

>NTDB_id=439969 HG718_RS06610 WP_160587855.1 1385350..1385847(+) (ssb) [Pyruvatibacter mobilis strain CGMCC 1.15125]
MAGSVNKVILVGNLGADPEVRHTQDGRPIVNLRIATSESWRDRSTGERRERTEWHRVVIFSEGLAKIAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSTLTMLDGRSGGEGGGSMGGGGGAMGGGGSMGGGGGGRPSQPADDFGGGDFD
DEVPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=439969 HG718_RS06610 WP_160587855.1 1385350..1385847(+) (ssb) [Pyruvatibacter mobilis strain CGMCC 1.15125]
ATGGCAGGCAGCGTGAACAAGGTGATCCTCGTCGGCAATCTGGGTGCGGACCCGGAAGTGCGCCACACGCAGGACGGCCG
CCCGATTGTCAATCTGCGCATTGCGACGTCTGAAAGCTGGCGCGACCGCAGCACCGGGGAACGCCGCGAGCGCACCGAGT
GGCACCGCGTGGTGATCTTCTCCGAAGGCCTCGCCAAGATTGCCGAGCAATATCTGCGCAAGGGCTCGAAGGTCTATCTG
GAGGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGTCCGGCCAGGACCGCTACTCCACCGAAGTGGTGCTGCAGGGCTT
CAACTCAACGCTGACCATGCTGGACGGTCGCAGCGGCGGCGAAGGCGGCGGCTCCATGGGCGGTGGCGGTGGTGCCATGG
GTGGTGGTGGCTCCATGGGTGGCGGCGGCGGTGGCCGCCCGTCCCAGCCGGCCGATGATTTCGGCGGCGGCGACTTCGAC
GACGAAGTGCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A845QBZ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.733

100

0.564
  ssb Vibrio cholerae strain A1552

52.874

100

0.558
  ssb Neisseria meningitidis MC58

37.989

100

0.412
  ssb Neisseria gonorrhoeae MS11

37.989

100

0.412