Detailed information NTG0439935

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HG264_RS09000
• Genome accession: NZ_CP051625
• Coordinates: 1951735..1953081 (+)
• Length: 448 a.a.
• NCBI ID: WP_169407343.1
• Uniprot ID: A0A7Z2V3D7
• Organism: Pseudomonas sp. gcc21
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1946735..1958081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG264_RS08980 (HG264_08975)	rluD	1947465..1948424 (-)	960	WP_169407339.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HG264_RS08985 (HG264_08980)	-	1948622..1949617 (+)	996	WP_169407340.1	outer membrane protein assembly factor BamD	-
HG264_RS08990 (HG264_08985)	-	1949821..1950057 (+)	237	WP_169407341.1	PP0621 family protein	-
HG264_RS08995 (HG264_08990)	pilS	1950108..1951682 (+)	1575	WP_169407342.1	PAS domain-containing sensor histidine kinase	Regulator
HG264_RS09000 (HG264_08995)	pilR	1951735..1953081 (+)	1347	WP_169407343.1	sigma-54 dependent transcriptional regulator	Regulator
HG264_RS09005 (HG264_09000)	-	1953085..1954188 (-)	1104	WP_169409075.1	FAD-binding oxidoreductase	-
HG264_RS09010 (HG264_09005)	mqo	1954391..1955893 (+)	1503	WP_169407344.1	malate dehydrogenase (quinone)	-
HG264_RS09015 (HG264_09010)	-	1955869..1956942 (-)	1074	WP_169407345.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49485.87 Da
• Isoelectric Point: 5.1510

>NTDB_id=439935 HG264_RS09000 WP_169407343.1 1951735..1953081(+) (pilR) [Pseudomonas sp. gcc21]
MNNPLVLIIDDEPDILELLDMTLKRMEVRTRCAATLSQALELLAEHSFDLCLTDMRLPDGDGLSVVRYIQQHAPDTPVAM
ITAYGSLDTAITALKAGAFDFLTKPVDLKRLRDLVTSALRLREPQARAASDAPADPILGSSAPIQKLRKQIAKLARSQAP
LYISGESGSGKELVARRIHALGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVADKPGLFQAARGGTLFLDEVAD
LPIAMQVKLLRAIQEKAIRPVGTQQEEPVDVRLLCATHKDLAAEVAEGRFRQDLFYRINVIELSVPPLRERRDDIPQLAE
HALAGLATRADMPVPTLTDACKEMLCNYRFPGNVRELENILERAFTLCDDDVIDVGDIHLSGIPNTPSEQQPALNQIDSL
EDFLDDIERQAIMQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGLDD

Nucleotide

• Length: 1347 bp

>NTDB_id=439935 HG264_RS09000 WP_169407343.1 1951735..1953081(+) (pilR) [Pseudomonas sp. gcc21]
ATGAACAATCCGCTGGTACTGATCATTGACGATGAGCCCGACATTCTCGAGCTGCTCGACATGACGCTCAAGCGGATGGA
GGTGCGGACCCGATGCGCGGCAACGCTGAGCCAGGCGCTGGAACTGCTGGCCGAACACAGCTTTGACCTGTGTCTTACCG
ACATGCGGTTACCCGACGGCGACGGCCTGTCTGTGGTGCGTTATATCCAGCAGCATGCGCCGGATACGCCAGTCGCCATG
ATTACCGCTTATGGCAGTCTCGACACCGCCATTACAGCCCTCAAAGCCGGCGCCTTTGATTTCCTCACCAAGCCAGTCGA
CCTCAAACGCCTGCGCGACCTGGTCACCAGCGCCCTGCGTCTGCGGGAGCCGCAAGCACGCGCCGCGAGTGATGCGCCCG
CCGACCCGATCCTGGGTTCATCTGCACCTATTCAAAAGCTTCGCAAGCAAATTGCCAAACTCGCGCGCAGCCAGGCGCCG
CTGTATATCAGTGGCGAATCAGGCAGCGGCAAGGAGCTGGTAGCGCGGCGCATCCACGCATTGGGGCCGCGCGCTTCGCA
ACCCTTTGTGCCAGTGAACTGCGGCGCCATTCCGTCGGAGCTGATGGAAAGCGAGTTTTTCGGTCATCGCAAAGGCAGCT
TCAGCGGCGCCGTCGCAGACAAGCCCGGCCTGTTCCAGGCGGCTAGAGGCGGCACGCTGTTTCTGGATGAAGTCGCCGAT
TTGCCGATCGCCATGCAGGTGAAGCTGCTCCGGGCCATACAGGAAAAAGCCATTCGCCCGGTAGGCACCCAGCAGGAAGA
GCCGGTAGACGTTCGCCTGCTCTGCGCAACGCACAAGGATCTGGCAGCAGAGGTAGCCGAGGGCCGATTCCGGCAGGATC
TGTTTTACCGCATCAATGTCATTGAGCTCAGCGTGCCCCCGCTGCGCGAACGACGTGATGACATCCCGCAGCTTGCCGAA
CACGCCCTGGCCGGGCTGGCAACACGAGCCGACATGCCCGTCCCGACGCTGACTGACGCGTGTAAGGAGATGCTTTGCAA
TTATCGTTTTCCGGGAAACGTCCGGGAACTGGAGAACATCCTTGAGCGCGCTTTCACGTTATGTGACGACGACGTCATCG
ATGTGGGCGACATCCATTTGTCCGGCATCCCGAATACGCCATCCGAACAGCAGCCGGCACTGAACCAGATCGATTCGCTT
GAGGATTTCCTCGATGACATCGAGCGCCAGGCCATCATGCAGGCGCTCGAGGAAACCCGCTGGAACAAGACCGCTGCGGC
GAAACGCCTTGGCCTGACCTTTCGCTCCTTGCGCTATCGCCTGAAAAAGCTCGGCCTCGACGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (6-115)

3D structure

• AlphaFold DB: A0A7Z2V3D7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	71.205	100	0.712
pilR	Acinetobacter baumannii strain A118	50.108	100	0.516
luxO	Vibrio cholerae strain A1552	36.83	100	0.368