Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HG264_RS08995 Genome accession   NZ_CP051625
Coordinates   1950108..1951682 (+) Length   524 a.a.
NCBI ID   WP_169407342.1    Uniprot ID   A0A7Z2V3T8
Organism   Pseudomonas sp. gcc21     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1945108..1956682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG264_RS08975 (HG264_08970) pgeF 1946731..1947465 (-) 735 WP_169407338.1 peptidoglycan editing factor PgeF -
  HG264_RS08980 (HG264_08975) rluD 1947465..1948424 (-) 960 WP_169407339.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HG264_RS08985 (HG264_08980) - 1948622..1949617 (+) 996 WP_169407340.1 outer membrane protein assembly factor BamD -
  HG264_RS08990 (HG264_08985) - 1949821..1950057 (+) 237 WP_169407341.1 PP0621 family protein -
  HG264_RS08995 (HG264_08990) pilS 1950108..1951682 (+) 1575 WP_169407342.1 PAS domain-containing sensor histidine kinase Regulator
  HG264_RS09000 (HG264_08995) pilR 1951735..1953081 (+) 1347 WP_169407343.1 sigma-54 dependent transcriptional regulator Regulator
  HG264_RS09005 (HG264_09000) - 1953085..1954188 (-) 1104 WP_169409075.1 FAD-binding oxidoreductase -
  HG264_RS09010 (HG264_09005) mqo 1954391..1955893 (+) 1503 WP_169407344.1 malate dehydrogenase (quinone) -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 59168.30 Da        Isoelectric Point: 6.3749

>NTDB_id=439934 HG264_RS08995 WP_169407342.1 1950108..1951682(+) (pilS) [Pseudomonas sp. gcc21]
MMPESQRPWILRIYNIYRVILGFCLAILTNAALRDGLLDLDNPSLYETASWVYLFVNVLIALMLHEGRREGYLFVLAVLD
IFMLGILFYAAGGVSSGFGNLLIIPVATGNILLHGRIGLLLASLASLVVIYLTFFLSLSHPAASQSYLQVGVLGCIFFAV
ALFVQRLSRQLRQSESLAQQQAVSLASLEKLNQLIIQRMRTGIIVVGPQQKVLQANEASAQMLGKPIIREMELEQLAPDL
AQRLQQWRNYPSIRTLPFRNHRGGVEIMANFKPLAQESDDTVLVFLDDNTQVAQQAQQLKLASLGRLTASIAHEIRNPLG
AISHAAQLLRESSQINEQDQRLSEIIQQHSKRMNKVIETVLELSRRRPSEPQLVDLRLWTEQFLEDFKHVTLATDTVELE
AAEEELLTRIDPNQLNQVLNNLCQNALRYSGNAGTTRTIWLKLYQNRDTELPVLEVIDHGPGIDDEHVQHVFEPFYTTEV
SGTGLGLYISRELCESNQARLEYERLEPRGSCMRITFAHPKRLI

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=439934 HG264_RS08995 WP_169407342.1 1950108..1951682(+) (pilS) [Pseudomonas sp. gcc21]
ATGATGCCCGAGTCGCAACGGCCCTGGATCCTGCGGATCTATAACATCTACCGCGTGATTCTGGGCTTCTGTCTGGCGAT
CCTTACCAATGCTGCGCTGCGTGACGGGCTTCTGGACCTGGATAACCCGAGCCTCTACGAGACCGCCAGCTGGGTCTATC
TGTTCGTCAACGTACTGATCGCCCTGATGCTGCATGAAGGGCGCCGCGAAGGATATCTCTTCGTTCTGGCGGTGCTCGAC
ATCTTCATGCTCGGCATTCTGTTCTATGCCGCAGGCGGCGTAAGCAGCGGTTTCGGCAACTTGTTGATCATTCCCGTGGC
CACCGGCAACATCCTGCTGCACGGCCGCATCGGCTTGTTGCTCGCTTCGCTCGCCAGCCTGGTAGTGATCTACCTGACGT
TCTTCCTCAGCCTGTCGCACCCGGCTGCCAGTCAGAGTTATCTGCAGGTCGGCGTACTGGGGTGCATCTTTTTTGCCGTC
GCATTGTTTGTGCAGCGACTCAGCCGCCAGTTGCGGCAATCCGAGTCACTGGCCCAGCAACAGGCAGTGAGCCTCGCCTC
GCTGGAGAAGCTCAATCAGCTGATCATCCAGCGCATGCGTACCGGCATCATCGTGGTCGGCCCCCAGCAGAAAGTGCTTC
AGGCGAACGAGGCGTCCGCACAGATGCTGGGCAAGCCGATCATTCGTGAAATGGAGCTTGAACAACTGGCTCCTGATCTG
GCCCAGCGACTCCAACAATGGCGCAACTACCCGTCGATCCGCACCCTGCCCTTTCGCAACCACCGCGGCGGTGTGGAAAT
CATGGCCAATTTCAAACCGCTTGCCCAGGAAAGCGACGATACCGTGCTGGTTTTTCTGGATGACAATACCCAGGTAGCCC
AGCAAGCCCAGCAGCTCAAATTGGCTTCCCTGGGTCGCCTGACCGCTAGCATCGCCCACGAAATACGCAACCCGCTGGGG
GCCATCAGCCACGCCGCACAACTGCTGCGCGAATCGAGCCAGATCAACGAACAGGACCAACGCCTGAGCGAAATCATCCA
GCAGCATTCCAAGCGCATGAACAAGGTCATCGAAACAGTTCTGGAGTTATCCCGTCGTCGCCCCAGCGAGCCACAGCTGG
TGGACCTGCGGCTCTGGACCGAGCAGTTCCTGGAAGACTTCAAACATGTCACGCTGGCGACCGATACGGTGGAGCTCGAA
GCAGCGGAAGAGGAGTTGCTTACTCGGATTGATCCGAATCAGCTCAATCAGGTGCTCAACAATCTTTGCCAGAACGCCCT
GCGCTACAGCGGGAACGCTGGGACGACGCGTACCATCTGGCTCAAGCTATATCAGAACCGTGATACCGAGCTGCCCGTGC
TGGAGGTGATCGATCACGGTCCCGGCATTGACGACGAACATGTACAACACGTATTCGAGCCTTTTTATACGACAGAGGTG
TCGGGTACCGGCCTGGGGCTGTATATCTCGCGTGAACTCTGCGAGAGCAATCAGGCCAGACTGGAATATGAACGACTCGA
GCCACGGGGAAGCTGTATGCGTATTACCTTCGCACATCCGAAACGGCTGATATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(303-366)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(411-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2V3T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

50.575

99.618

0.504