Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HGN31_RS14770 Genome accession   NZ_CP051542
Coordinates   3084164..3084706 (+) Length   180 a.a.
NCBI ID   WP_168783692.1    Uniprot ID   -
Organism   Paracoccus sanguinis strain OM2164     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3079164..3089706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGN31_RS14750 (HGN31_14745) - 3080150..3081931 (-) 1782 WP_168783690.1 hypothetical protein -
  HGN31_RS14755 (HGN31_14750) - 3081915..3082211 (-) 297 WP_211096307.1 hypothetical protein -
  HGN31_RS14760 (HGN31_14755) - 3082440..3082976 (+) 537 WP_036734582.1 shikimate kinase -
  HGN31_RS14765 (HGN31_14760) aroB 3082973..3084073 (+) 1101 WP_168783691.1 3-dehydroquinate synthase -
  HGN31_RS14770 (HGN31_14765) ssb 3084164..3084706 (+) 543 WP_168783692.1 single-stranded DNA-binding protein Machinery gene
  HGN31_RS14775 (HGN31_14770) - 3084867..3085526 (+) 660 WP_036703643.1 lytic transglycosylase domain-containing protein -
  HGN31_RS14780 (HGN31_14775) - 3085716..3086060 (-) 345 WP_342355779.1 hypothetical protein -
  HGN31_RS14785 (HGN31_14780) hemB 3086096..3087100 (-) 1005 WP_168783693.1 porphobilinogen synthase -
  HGN31_RS14790 (HGN31_14785) - 3087348..3087938 (+) 591 WP_168783694.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18919.40 Da        Isoelectric Point: 5.3537

>NTDB_id=439699 HGN31_RS14770 WP_168783692.1 3084164..3084706(+) (ssb) [Paracoccus sanguinis strain OM2164]
MAGSVNKVILIGNLGQDPEVRSFQNGGKVVNLRIATSEQWKDRNSGERRERTEWHSVAIFSEPLGRIAEQYLKKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYRSELTLLDGRGGSGGGGGYGGDGDYGRGSGGGGRDYDGGYGGGSDRGGASGGS
SGGSGSGGRGGADFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=439699 HGN31_RS14770 WP_168783692.1 3084164..3084706(+) (ssb) [Paracoccus sanguinis strain OM2164]
ATGGCAGGGAGCGTCAACAAGGTCATCCTGATCGGAAATCTGGGTCAGGACCCCGAAGTCCGCAGTTTCCAGAACGGCGG
CAAGGTGGTGAACCTGCGCATCGCCACGTCCGAGCAGTGGAAGGACCGCAACTCGGGCGAGCGGCGCGAGCGGACCGAGT
GGCACTCGGTGGCGATCTTTTCGGAACCGCTGGGCCGGATCGCCGAGCAGTATCTGAAGAAGGGCAGCAAGGTCTACATC
GAGGGCCAGCTCGAGACCCGGAAGTGGCAGGACCAGTCCGGGCAGGACAGATACAGCACCGAGGTCGTGCTGCGCCCCTA
TCGCAGCGAGCTGACGCTGCTCGACGGGCGCGGCGGCTCGGGCGGCGGCGGCGGTTACGGCGGCGACGGTGACTATGGCC
GCGGCTCGGGCGGTGGCGGGCGCGACTACGACGGCGGCTACGGCGGCGGGTCGGACCGCGGCGGCGCGTCGGGCGGCTCG
TCCGGCGGGTCCGGCTCGGGTGGCCGCGGCGGCGCCGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.718

98.333

0.489
  ssb Glaesserella parasuis strain SC1401

44.503

100

0.472
  ssb Neisseria gonorrhoeae MS11

40.884

100

0.411
  ssb Neisseria meningitidis MC58

40.884

100

0.411