Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HG575_RS00220 Genome accession   NZ_CP051540
Coordinates   39406..40542 (+) Length   378 a.a.
NCBI ID   WP_202248348.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34406..45542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS00185 (HG575_00185) panD 34845..35198 (+) 354 WP_202248342.1 aspartate 1-decarboxylase -
  HG575_RS00190 (HG575_00190) - 35201..35503 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG575_RS00195 (HG575_00195) - 35503..36498 (+) 996 WP_202249206.1 PDZ domain-containing protein -
  HG575_RS00200 (HG575_00200) comB6 36506..37561 (+) 1056 WP_202249204.1 P-type conjugative transfer protein TrbL Machinery gene
  HG575_RS00205 (HG575_00205) comB7 37577..37690 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG575_RS00210 (HG575_00210) comB8 37687..38430 (+) 744 WP_202248344.1 virB8 family protein Machinery gene
  HG575_RS00215 (HG575_00215) comB9 38430..39413 (+) 984 WP_202248346.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG575_RS00220 (HG575_00220) comB10 39406..40542 (+) 1137 WP_202248348.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG575_RS00225 (HG575_00225) - 40612..42024 (+) 1413 WP_202248350.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG575_RS00230 (HG575_00230) gmd 42066..43211 (+) 1146 WP_202248352.1 GDP-mannose 4,6-dehydratase -
  HG575_RS00235 (HG575_00235) - 43204..44136 (+) 933 WP_202248354.1 GDP-L-fucose synthase -
  HG575_RS00240 (HG575_00240) - 44254..44427 (+) 174 WP_165536749.1 hypothetical protein -
  HG575_RS07685 - 44484..44833 (-) 350 Protein_42 hypothetical protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42048.57 Da        Isoelectric Point: 9.8255

>NTDB_id=439658 HG575_RS00220 WP_202248348.1 39406..40542(+) (comB10) [Helicobacter pylori strain LIM-002]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTNPPIDLKASTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=439658 HG575_RS00220 WP_202248348.1 39406..40542(+) (comB10) [Helicobacter pylori strain LIM-002]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATTTAAAAGC
AAGCACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGTTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGCAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

97.354

100

0.974