Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HG575_RS00210 Genome accession   NZ_CP051540
Coordinates   37687..38430 (+) Length   247 a.a.
NCBI ID   WP_202248344.1    Uniprot ID   -
Organism   Helicobacter pylori strain LIM-002     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 32687..43430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG575_RS00185 (HG575_00185) panD 34845..35198 (+) 354 WP_202248342.1 aspartate 1-decarboxylase -
  HG575_RS00190 (HG575_00190) - 35201..35503 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HG575_RS00195 (HG575_00195) - 35503..36498 (+) 996 WP_202249206.1 PDZ domain-containing protein -
  HG575_RS00200 (HG575_00200) comB6 36506..37561 (+) 1056 WP_202249204.1 P-type conjugative transfer protein TrbL Machinery gene
  HG575_RS00205 (HG575_00205) comB7 37577..37690 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HG575_RS00210 (HG575_00210) comB8 37687..38430 (+) 744 WP_202248344.1 virB8 family protein Machinery gene
  HG575_RS00215 (HG575_00215) comB9 38430..39413 (+) 984 WP_202248346.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HG575_RS00220 (HG575_00220) comB10 39406..40542 (+) 1137 WP_202248348.1 DNA type IV secretion system protein ComB10 Machinery gene
  HG575_RS00225 (HG575_00225) - 40612..42024 (+) 1413 WP_202248350.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HG575_RS00230 (HG575_00230) gmd 42066..43211 (+) 1146 WP_202248352.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28837.05 Da        Isoelectric Point: 8.9604

>NTDB_id=439656 HG575_RS00210 WP_202248344.1 37687..38430(+) (comB8) [Helicobacter pylori strain LIM-002]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQNHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=439656 HG575_RS00210 WP_202248344.1 37687..38430(+) (comB8) [Helicobacter pylori strain LIM-002]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGTTGGAAAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGCTTTATCGCGCTTATCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCCCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GTGCAAAATCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCAGCTAAACTAACGAACGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
GCACCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98