Detailed information NTG0439556

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HG582_RS00215
• Genome accession: NZ_CP051534
• Coordinates: 38843..39973 (+)
• Length: 376 a.a.
• NCBI ID: WP_202143935.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain LIM-009
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33843..44973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HG582_RS00180 (HG582_00180)	panD	34267..34620 (+)	354	WP_000142252.1	aspartate 1-decarboxylase	-
HG582_RS00185 (HG582_00185)	-	34623..34925 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HG582_RS00190 (HG582_00190)	-	34925..35929 (+)	1005	WP_202143932.1	PDZ domain-containing protein	-
HG582_RS00195 (HG582_00195)	comB6	35937..36992 (+)	1056	WP_202144352.1	P-type conjugative transfer protein TrbL	Machinery gene
HG582_RS00200 (HG582_00200)	comB7	37008..37121 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HG582_RS00205 (HG582_00205)	comB8	37118..37861 (+)	744	WP_202143933.1	virB8 family protein	Machinery gene
HG582_RS00210 (HG582_00210)	comB9	37861..38850 (+)	990	WP_202143934.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HG582_RS00215 (HG582_00215)	comB10	38843..39973 (+)	1131	WP_202143935.1	DNA type IV secretion system protein ComB10	Machinery gene
HG582_RS00220 (HG582_00220)	-	40044..41462 (+)	1419	WP_202143936.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HG582_RS00225 (HG582_00225)	gmd	41472..42617 (+)	1146	WP_165515408.1	GDP-mannose 4,6-dehydratase	-
HG582_RS00230 (HG582_00230)	-	42610..43541 (+)	932	Protein_39	GDP-L-fucose synthase	-
HG582_RS00235 (HG582_00235)	-	43867..44286 (-)	420	WP_235262783.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41949.44 Da
• Isoelectric Point: 9.8624

>NTDB_id=439556 HG582_RS00215 WP_202143935.1 38843..39973(+) (comB10) [Helicobacter pylori strain LIM-009]
MNKWLKGALIVAGGFITITSISLVYHQKPKAPLNNQQNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPMNPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=439556 HG582_RS00215 WP_202143935.1 38843..39973(+) (comB10) [Helicobacter pylori strain LIM-009]
ATGAATAAGTGGCTTAAGGGGGCGTTGATTGTTGCAGGGGGTTTTATAACGATTACAAGTATTTCTTTAGTCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACAAAACCTTCTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCATTCCAAAGAAGAAACTTTTACTAACCCTCCCATGAATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGACTTACTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGAAAAGCCGTTTTGATCCCTA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGGATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTATTCATTTCGCCCAACACTGACATCTTCTTCCCTATACCCAGAGAAAATGAAGTCATCGCGGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	94.681	100	0.947